Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LG653_RS01010 Genome accession   NZ_CP084921
Coordinates   190477..190950 (-) Length   157 a.a.
NCBI ID   WP_005804545.1    Uniprot ID   A0A009N256
Organism   Acinetobacter pittii strain CEP14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185477..195950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG653_RS00995 (LG653_00995) pilX 188116..188925 (-) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LG653_RS01000 (LG653_01000) pilW 188922..189923 (-) 1002 WP_005804547.1 PilW family protein Machinery gene
  LG653_RS01005 (LG653_01005) pilV 189923..190483 (-) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  LG653_RS01010 (LG653_01010) fimU 190477..190950 (-) 474 WP_005804545.1 GspH/FimT family pseudopilin Machinery gene
  LG653_RS01015 (LG653_01015) ispH 191120..192070 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LG653_RS01020 (LG653_01020) gmk 192193..192822 (+) 630 WP_005804544.1 guanylate kinase -
  LG653_RS01025 (LG653_01025) rpoZ 192895..193173 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  LG653_RS01030 (LG653_01030) - 193245..193367 (+) 123 Protein_192 hypothetical protein -
  LG653_RS01035 (LG653_01035) spoT 193383..195488 (+) 2106 WP_002116807.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=614068 LG653_RS01010 WP_005804545.1 190477..190950(-) (fimU) [Acinetobacter pittii strain CEP14]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTILSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=614068 LG653_RS01010 WP_005804545.1 190477..190950(-) (fimU) [Acinetobacter pittii strain CEP14]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAATCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTAATAACCAATATCACCCAAGACACAATTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009N256

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879