Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LG653_RS00995 Genome accession   NZ_CP084921
Coordinates   188116..188925 (-) Length   269 a.a.
NCBI ID   WP_005067126.1    Uniprot ID   A0A009NM66
Organism   Acinetobacter pittii strain CEP14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183116..193925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG653_RS00980 (LG653_00980) pilE 183335..183760 (-) 426 WP_025464177.1 type IV pilin protein Machinery gene
  LG653_RS00985 (LG653_00985) pilY2 183757..184239 (-) 483 WP_005804550.1 type IV pilin protein Machinery gene
  LG653_RS00990 (LG653_00990) pilY1 184250..188104 (-) 3855 WP_005804549.1 PilC/PilY family type IV pilus protein Machinery gene
  LG653_RS00995 (LG653_00995) pilX 188116..188925 (-) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LG653_RS01000 (LG653_01000) pilW 188922..189923 (-) 1002 WP_005804547.1 PilW family protein Machinery gene
  LG653_RS01005 (LG653_01005) pilV 189923..190483 (-) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  LG653_RS01010 (LG653_01010) fimU 190477..190950 (-) 474 WP_005804545.1 GspH/FimT family pseudopilin Machinery gene
  LG653_RS01015 (LG653_01015) ispH 191120..192070 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LG653_RS01020 (LG653_01020) gmk 192193..192822 (+) 630 WP_005804544.1 guanylate kinase -
  LG653_RS01025 (LG653_01025) rpoZ 192895..193173 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  LG653_RS01030 (LG653_01030) - 193245..193367 (+) 123 Protein_192 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28531.35 Da        Isoelectric Point: 7.7238

>NTDB_id=614065 LG653_RS00995 WP_005067126.1 188116..188925(-) (pilX) [Acinetobacter pittii strain CEP14]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=614065 LG653_RS00995 WP_005067126.1 188116..188925(-) (pilX) [Acinetobacter pittii strain CEP14]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGAGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCCAATAATGCGGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCGGAAGGTACGCAACTTCCTAAAAGCATGTT
GTCTACGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGTTTAAGCACGAGTTCGGCAAAAATTAGCGATAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NM66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907