Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   LG653_RS01000 Genome accession   NZ_CP084921
Coordinates   188922..189923 (-) Length   333 a.a.
NCBI ID   WP_005804547.1    Uniprot ID   A0A009NFM5
Organism   Acinetobacter pittii strain CEP14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183922..194923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG653_RS00990 (LG653_00990) pilY1 184250..188104 (-) 3855 WP_005804549.1 PilC/PilY family type IV pilus protein Machinery gene
  LG653_RS00995 (LG653_00995) pilX 188116..188925 (-) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LG653_RS01000 (LG653_01000) pilW 188922..189923 (-) 1002 WP_005804547.1 PilW family protein Machinery gene
  LG653_RS01005 (LG653_01005) pilV 189923..190483 (-) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  LG653_RS01010 (LG653_01010) fimU 190477..190950 (-) 474 WP_005804545.1 GspH/FimT family pseudopilin Machinery gene
  LG653_RS01015 (LG653_01015) ispH 191120..192070 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LG653_RS01020 (LG653_01020) gmk 192193..192822 (+) 630 WP_005804544.1 guanylate kinase -
  LG653_RS01025 (LG653_01025) rpoZ 192895..193173 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  LG653_RS01030 (LG653_01030) - 193245..193367 (+) 123 Protein_192 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35785.45 Da        Isoelectric Point: 6.3332

>NTDB_id=614066 LG653_RS01000 WP_005804547.1 188922..189923(-) (pilW) [Acinetobacter pittii strain CEP14]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTASTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSDAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=614066 LG653_RS01000 WP_005804547.1 188922..189923(-) (pilW) [Acinetobacter pittii strain CEP14]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCAACTCAATTATTTATTGGTGGACTTCTATCAAGTCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGCTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGCTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGGGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAGATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACGCCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NFM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85