Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LHA31_RS06735 Genome accession   NZ_CP084916
Coordinates   1362773..1363297 (-) Length   174 a.a.
NCBI ID   WP_035020990.1    Uniprot ID   A0A1H1A4D8
Organism   Carnobacterium viridans strain AB01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1357773..1368297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA31_RS06715 (LHA31_06715) dnaB 1358255..1359640 (-) 1386 WP_089977427.1 replicative DNA helicase -
  LHA31_RS06720 (LHA31_06720) rplI 1359831..1360285 (-) 455 Protein_1269 50S ribosomal protein L9 -
  LHA31_RS06725 (LHA31_06725) - 1360290..1362290 (-) 2001 WP_035020993.1 DHH family phosphoesterase -
  LHA31_RS06730 (LHA31_06730) rpsR 1362503..1362742 (-) 240 WP_013709704.1 30S ribosomal protein S18 -
  LHA31_RS06735 (LHA31_06735) ssb 1362773..1363297 (-) 525 WP_035020990.1 single-stranded DNA-binding protein Machinery gene
  LHA31_RS06740 (LHA31_06740) rpsF 1363345..1363644 (-) 300 WP_013709702.1 30S ribosomal protein S6 -
  LHA31_RS06745 (LHA31_06745) gyrA 1363923..1366502 (-) 2580 WP_089977420.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19554.27 Da        Isoelectric Point: 5.2932

>NTDB_id=614051 LHA31_RS06735 WP_035020990.1 1362773..1363297(-) (ssb) [Carnobacterium viridans strain AB01]
MINNVVLVGRLTKDADLRYTSNGTAVATFSLAVNRQFTNQKGERDADFINCVIWRKSAESFANFTRKGALVGVEGRIQTR
SYDNQQGQRVYVTEVVVETFSLLESKSKNDQRKDQNDSQAQSGSYGSQQKSYNTNTQSNSQEAPRNQQYQNFGNSDPFEK
SGQPIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=614051 LHA31_RS06735 WP_035020990.1 1362773..1363297(-) (ssb) [Carnobacterium viridans strain AB01]
GTGATTAACAATGTTGTTTTAGTTGGAAGATTAACAAAAGATGCTGATTTAAGATACACTTCAAATGGCACAGCGGTAGC
AACTTTTTCATTGGCTGTAAACAGACAGTTTACAAACCAAAAAGGTGAAAGAGATGCAGATTTTATCAACTGTGTGATTT
GGAGAAAGAGTGCTGAATCATTTGCAAACTTCACCAGAAAAGGTGCATTAGTAGGTGTAGAAGGCCGTATCCAAACACGT
TCTTACGATAATCAACAAGGGCAACGTGTATATGTTACTGAAGTAGTTGTTGAAACGTTCTCATTATTAGAATCAAAATC
TAAAAATGATCAACGTAAAGATCAAAATGATTCTCAAGCTCAATCGGGATCATATGGTTCTCAACAAAAATCTTATAACA
CTAATACACAAAGTAATTCACAAGAAGCTCCCCGTAACCAACAATATCAAAACTTTGGAAACTCTGATCCTTTTGAAAAG
AGCGGACAACCGATTGATATTTCAGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1A4D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.205

100

0.649
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.897

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.259

62.069

0.368