Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EL334_RS02695 Genome accession   NZ_AP019192
Coordinates   498471..499520 (+) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ASP0581     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 493471..504520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS02665 (ASP0581_04960) - 494394..494798 (+) 405 WP_000343113.1 hypothetical protein -
  EL334_RS02670 (ASP0581_04970) dnaJ 495142..496278 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  EL334_RS02675 - 496612..496806 (-) 195 WP_001808905.1 hypothetical protein -
  EL334_RS02680 (ASP0581_04980) - 496968..497255 (-) 288 WP_000777753.1 hypothetical protein -
  EL334_RS02685 (ASP0581_04990) - 497265..497675 (-) 411 WP_033705511.1 HIT family protein -
  EL334_RS02690 (ASP0581_05000) pptA 497743..498474 (+) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  EL334_RS02695 (ASP0581_05010) pptB 498471..499520 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  EL334_RS02705 (ASP0581_05020) - 499688..500017 (-) 330 WP_000132572.1 hypothetical protein -
  EL334_RS02710 (ASP0581_05030) - 500294..500632 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  EL334_RS02715 (ASP0581_05040) comE/blpR 500637..501374 (+) 738 WP_001219122.1 response regulator transcription factor Regulator
  EL334_RS02720 (ASP0581_05050) - 501387..502727 (+) 1341 WP_000275285.1 sensor histidine kinase -
  EL334_RS02725 (ASP0581_05060) blpC 502772..502927 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  EL334_RS02730 (ASP0581_05070) - 502984..504345 (-) 1362 WP_033705510.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=61398 EL334_RS02695 WP_000653771.1 498471..499520(+) (pptB) [Streptococcus pneumoniae strain ASP0581]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=61398 EL334_RS02695 WP_000653771.1 498471..499520(+) (pptB) [Streptococcus pneumoniae strain ASP0581]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTACTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment