Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   N175_RS13550 Genome accession   NC_022223
Coordinates   2968110..2968757 (+) Length   215 a.a.
NCBI ID   WP_026027842.1    Uniprot ID   -
Organism   Vibrio anguillarum M3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2963110..2973757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N175_RS13535 (N175_14025) - 2963718..2965160 (-) 1443 WP_013857890.1 hypothetical protein -
  N175_RS13540 (N175_14030) csrD 2965173..2967161 (-) 1989 WP_029189909.1 RNase E specificity factor CsrD -
  N175_RS13545 (N175_14035) ssb 2967291..2967824 (-) 534 WP_013857892.1 single-stranded DNA-binding protein Machinery gene
  N175_RS13550 (N175_14040) qstR 2968110..2968757 (+) 648 WP_026027842.1 LuxR C-terminal-related transcriptional regulator Regulator
  N175_RS13555 (N175_14045) galU 2968875..2969744 (+) 870 WP_013857894.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  N175_RS13560 (N175_14050) uvrA 2969913..2972735 (+) 2823 WP_026029161.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25033.82 Da        Isoelectric Point: 8.1663

>NTDB_id=61387 N175_RS13550 WP_026027842.1 2968110..2968757(+) (qstR) [Vibrio anguillarum M3]
MRKANYTRTIYFLCLDKEQEHPYIDHLTDRLGLPIPKIEPEILRQTYCPDKHKILMIDHADYALLQQRLGNCPLSSQHHE
TILINVLQRLTTNDLLTFGHLKGLFYKNDTLDKIAFGLGEIINGQNWLPRHAVSQLLHYYRYAFESHTAQVITDLTAREI
QILRCLQTGASNNQMSEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQNILS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=61387 N175_RS13550 WP_026027842.1 2968110..2968757(+) (qstR) [Vibrio anguillarum M3]
ATGAGAAAAGCAAACTATACCCGCACCATTTACTTTCTTTGCTTAGATAAAGAACAAGAACACCCTTATATTGACCATTT
AACCGATCGGCTTGGACTGCCCATTCCGAAAATTGAGCCTGAAATCCTGCGCCAAACGTATTGTCCAGATAAACACAAAA
TATTGATGATTGACCATGCCGATTATGCGCTACTGCAGCAACGCTTGGGAAACTGCCCATTAAGCAGTCAGCATCATGAA
ACGATCCTTATCAATGTGTTGCAAAGATTAACCACGAATGACTTATTAACCTTTGGCCATTTAAAGGGGCTATTTTATAA
AAATGACACCCTAGATAAAATTGCATTTGGGCTTGGTGAAATCATTAACGGACAAAATTGGCTACCCAGACACGCTGTAA
GCCAGTTACTGCACTACTATCGCTACGCGTTTGAATCCCATACTGCTCAAGTGATTACAGACTTAACCGCCCGCGAAATA
CAGATCCTCCGCTGCTTACAAACTGGCGCATCGAATAACCAAATGTCGGAAGATTTATTCATCAGTGAATTCACGGTCAA
ATCACATCTCTACCAAATATTCAAAAAGCTATCGGTCAAAAATAGGGTCCAAGCGATTGCGTGGGCCAATCAAAATATTC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

66.822

99.535

0.665
  qstR Vibrio campbellii strain DS40M4

52.558

100

0.526
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.521

Multiple sequence alignment