Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LB315_RS06360 Genome accession   NZ_CP084892
Coordinates   1274447..1275319 (+) Length   290 a.a.
NCBI ID   WP_229374704.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1269447..1280319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS06340 (LB315_06345) ylqF 1270283..1271167 (+) 885 WP_000236718.1 ribosome biogenesis GTPase YlqF -
  LB315_RS06345 (LB315_06350) - 1271151..1271918 (+) 768 WP_000176391.1 ribonuclease HII -
  LB315_RS06350 (LB315_06355) sucC 1272027..1273193 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  LB315_RS06355 (LB315_06360) sucD 1273215..1274123 (+) 909 WP_229374703.1 succinate--CoA ligase subunit alpha -
  LB315_RS06360 (LB315_06365) dprA 1274447..1275319 (+) 873 WP_229374704.1 DNA-processing protein DprA Machinery gene
  LB315_RS06365 (LB315_06370) topA 1275493..1277568 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  LB315_RS06370 (LB315_06375) trmFO 1277724..1279031 (+) 1308 WP_229374705.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33199.39 Da        Isoelectric Point: 8.0647

>NTDB_id=613812 LB315_RS06360 WP_229374704.1 1274447..1275319(+) (dprA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVDRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINHLSYPHTLAVVGSRLSGDYTLKALNHLFASFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYSKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=613812 LB315_RS06360 WP_229374704.1 1274447..1275319(+) (dprA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGACGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTGACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCACCTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGCTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACTCATTATTCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.017

100

0.679
  dprA Staphylococcus aureus N315

66.207

100

0.662
  dprA Lactococcus lactis subsp. cremoris KW2

37.5

96.552

0.362
  dprA Vibrio campbellii strain DS40M4

38.745

93.448

0.362