Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EL334_RS00205 Genome accession   NZ_AP019192
Coordinates   36882..37652 (+) Length   256 a.a.
NCBI ID   WP_023396090.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ASP0581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31882..42652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS00190 (ASP0581_00290) - 33481..33918 (+) 438 WP_023396087.1 CoA-binding protein -
  EL334_RS00195 (ASP0581_00300) - 34135..35145 (-) 1011 WP_023396088.1 YeiH family protein -
  EL334_RS00200 (ASP0581_00310) - 35716..36885 (+) 1170 WP_023396089.1 pyridoxal phosphate-dependent aminotransferase -
  EL334_RS00205 (ASP0581_00320) recO 36882..37652 (+) 771 WP_023396090.1 DNA repair protein RecO Machinery gene
  EL334_RS00210 (ASP0581_00330) plsX 37649..38641 (+) 993 WP_023396091.1 phosphate acyltransferase PlsX -
  EL334_RS00215 (ASP0581_00340) - 38647..38880 (+) 234 WP_000136446.1 acyl carrier protein -
  EL334_RS00220 (ASP0581_00350) - 38917..39216 (+) 300 Protein_34 transposase family protein -
  EL334_RS00225 (ASP0581_00360) cipB 39419..39577 (+) 159 WP_001093073.1 bacteriocin class II family protein Regulator
  EL334_RS12455 - 39580..39705 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  EL334_RS00230 (ASP0581_00370) comA 40296..42449 (+) 2154 WP_000668280.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29816.30 Da        Isoelectric Point: 5.1721

>NTDB_id=61380 EL334_RS00205 WP_023396090.1 36882..37652(+) (recO) [Streptococcus pneumoniae strain ASP0581]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLEAISLKPEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=61380 EL334_RS00205 WP_023396090.1 36882..37652(+) (recO) [Streptococcus pneumoniae strain ASP0581]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGCAACTTTCGGGAGGATGACAAGCTCGTCAAGATTTT
TACAGAGCAGGCTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCTCCAGTTATTCAGCCCTTGG
TGCTGGCTCGATTTCTCTTACGAATCAATGATGACGGGCTCAGTTACATTGAGGACTATCATGAGGTGATGACTTTTCCC
AAGATTAATAGCGATCTCTTTGTCATGGCCTATGCGACCTATGTGGCGGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGTTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATTAGTCTCAATTTTAATGAGTGTGTCTTCTGTCATCGGATCGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGCGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAACCCCAATATCCCCTATCTGCTCAATCAGTTTCAAGCCATTGATTTTGAGACTTTGGAGGCCATTTCGCTCAAGCCCG
AAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTATTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.047

100

0.98

Multiple sequence alignment