Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   N175_RS12555 Genome accession   NC_022223
Coordinates   2763151..2764134 (-) Length   327 a.a.
NCBI ID   WP_013857714.1    Uniprot ID   -
Organism   Vibrio anguillarum M3     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2758151..2769134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N175_RS12545 (N175_12975) cysM 2759313..2760203 (+) 891 WP_026027976.1 cysteine synthase CysM -
  N175_RS12550 (N175_12980) mutS 2760446..2763034 (+) 2589 WP_029189955.1 DNA mismatch repair protein MutS -
  N175_RS12555 (N175_12985) rpoS 2763151..2764134 (-) 984 WP_013857714.1 RNA polymerase sigma factor RpoS Regulator
  N175_RS12560 (N175_12990) nlpD 2764207..2765139 (-) 933 WP_041769244.1 murein hydrolase activator NlpD -
  N175_RS12565 (N175_12995) - 2765145..2765771 (-) 627 WP_013857716.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  N175_RS12570 (N175_13000) surE 2765771..2766517 (-) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  N175_RS12575 (N175_13005) truD 2766530..2767627 (-) 1098 WP_013857717.1 tRNA pseudouridine(13) synthase TruD -
  N175_RS12580 (N175_13010) ispF 2767782..2768267 (-) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  N175_RS12585 (N175_13015) ispD 2768260..2768991 (-) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37663.41 Da        Isoelectric Point: 4.4722

>NTDB_id=61382 N175_RS12555 WP_013857714.1 2763151..2764134(-) (rpoS) [Vibrio anguillarum M3]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDTNNSDP
EISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEA
LFNVEYD

Nucleotide


Download         Length: 984 bp        

>NTDB_id=61382 N175_RS12555 WP_013857714.1 2763151..2764134(-) (rpoS) [Vibrio anguillarum M3]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGGTTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCATTGAAGAGGGTAATTTAGGCTTGATCCGTGCGGTAGAAAAATTTGATCCAGAACGTGGCT
TTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAACCAAACGCGCACTATCCGT
TTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCAGAAGTTAGATCATGAACC
TACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTACGTCTGAACGAGCGTATCA
GTTCCGTTGATACACCGATTGGCGGCGATGGTGACAAAGCACTACTCGATATCATCCCAGATACGAACAACTCTGATCCT
GAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTGAACCCAAAACAAAAAGAGGT
ACTTGCACGCCGTTTTGGACTATTAGGTTATGAACCGTCCACCTTAGAAGAAGTCGGGCGCGAAATTAACTTAACCCGTG
AACGAGTTCGTCAAATTCAAGTGGAAGGTCTACGTCGTTTGAGAGAGATCTTGGTTAAACAAGGCTTGAACATGGAAGCG
CTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

85.03

100

0.869

Multiple sequence alignment