Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NPS18_RS08475 Genome accession   NZ_CP101984
Coordinates   1714945..1715643 (-) Length   232 a.a.
NCBI ID   WP_002263491.1    Uniprot ID   Q8DSH0
Organism   Streptococcus mutans strain UA-159     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709945..1720643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS18_RS08460 (NPS18_08460) - 1710517..1711425 (-) 909 WP_002263495.1 ABC transporter ATP-binding protein -
  NPS18_RS08465 (NPS18_08465) - 1711712..1712962 (+) 1251 WP_002263494.1 ISL3-like element ISSmu2 family transposase -
  NPS18_RS08470 (NPS18_08470) - 1713548..1714927 (-) 1380 WP_002263492.1 sensor histidine kinase KdpD -
  NPS18_RS08475 (NPS18_08475) scnR 1714945..1715643 (-) 699 WP_002263491.1 response regulator transcription factor Regulator
  NPS18_RS08480 (NPS18_08480) - 1715748..1716701 (-) 954 Protein_1623 reverse transcriptase domain-containing protein -
  NPS18_RS10140 - 1716694..1717107 (-) 414 Protein_1624 transposase -
  NPS18_RS08485 (NPS18_08485) gatB 1717246..1718685 (-) 1440 WP_002263477.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  NPS18_RS08490 (NPS18_08490) gatA 1718685..1720151 (-) 1467 WP_002263829.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  NPS18_RS08495 (NPS18_08495) gatC 1720151..1720453 (-) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26106.25 Da        Isoelectric Point: 6.3461

>NTDB_id=613644 NPS18_RS08475 WP_002263491.1 1714945..1715643(-) (scnR) [Streptococcus mutans strain UA-159]
MSFESQLLKKHILIVDDDTSLNQSIKEVLMSRGFNNISSAYSIDEGIDIFSVSKIDLIILDVMLPDGEGYLLAKYIRKSS
DVPILFLTAKNSPDDEIKGLDSGGDDFVTKPFLPKTLSYRIIALLRRSYKGESELIELTFCTIDLNNASVLKGNEHLSLT
PTEIQILRKLYVNKNHIVSTEAICDAVWGLENFGYEKSLMVHIRNIREKIEKNSSKPVHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=613644 NPS18_RS08475 WP_002263491.1 1714945..1715643(-) (scnR) [Streptococcus mutans strain UA-159]
GTGTCTTTTGAATCACAATTATTGAAAAAGCATATCCTAATCGTAGATGATGATACATCATTGAACCAGTCCATCAAAGA
GGTTTTGATGAGTCGAGGGTTTAACAATATCAGTTCTGCCTATAGTATAGATGAAGGGATTGATATTTTTTCGGTATCAA
AGATTGATTTGATCATACTGGATGTCATGTTGCCCGATGGGGAAGGTTATTTATTGGCCAAATACATTCGAAAATCGTCA
GATGTCCCCATTTTATTTTTAACCGCAAAAAATAGTCCCGATGATGAAATCAAAGGACTTGATTCAGGAGGAGATGATTT
TGTCACCAAACCATTTCTTCCCAAGACCCTGTCTTATAGGATTATAGCCTTACTGAGGCGATCCTACAAAGGTGAATCTG
AACTTATCGAACTTACTTTCTGCACCATTGATTTAAATAATGCCAGTGTTTTAAAAGGCAATGAACATCTATCACTGACC
CCAACAGAAATTCAGATTCTTCGCAAACTTTATGTCAATAAAAACCACATCGTCTCCACAGAAGCGATTTGCGATGCGGT
GTGGGGACTTGAAAACTTTGGATACGAAAAATCATTAATGGTACATATCCGCAATATCAGAGAAAAAATCGAGAAAAACT
CCTCAAAGCCAGTGCATCTCATTACAGTCAAGGGTCTCGGGTATAAGCTGGTTATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DSH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.411

96.552

0.409
  vicR Streptococcus mutans UA159

37.826

99.138

0.375
  micA Streptococcus pneumoniae Cp1015

36.842

98.276

0.362