Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LGQ10_RS23755 Genome accession   NZ_CP084742
Coordinates   5189403..5190734 (-) Length   443 a.a.
NCBI ID   WP_226523377.1    Uniprot ID   -
Organism   Pseudomonas sp. L5B5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5184403..5195734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ10_RS23725 (LGQ10_23725) - 5185053..5185577 (-) 525 WP_058434268.1 GspH/FimT family protein -
  LGQ10_RS23730 (LGQ10_23730) pilV 5185869..5186300 (+) 432 WP_226523374.1 type IV pilus modification protein PilV -
  LGQ10_RS23735 (LGQ10_23735) - 5186297..5187007 (+) 711 WP_226523375.1 PilW family protein -
  LGQ10_RS23740 (LGQ10_23740) - 5187007..5187483 (+) 477 WP_226523376.1 PilX N-terminal domain-containing pilus assembly protein -
  LGQ10_RS23745 (LGQ10_23745) - 5187836..5188237 (+) 402 WP_058434264.1 type IV pilin protein -
  LGQ10_RS23750 (LGQ10_23750) thiO 5188294..5189406 (+) 1113 WP_058434263.1 glycine oxidase ThiO -
  LGQ10_RS23755 (LGQ10_23755) pilR 5189403..5190734 (-) 1332 WP_226523377.1 sigma-54-dependent transcriptional regulator Regulator
  LGQ10_RS23760 (LGQ10_23760) - 5191006..5191239 (-) 234 WP_226523378.1 PP0621 family protein -
  LGQ10_RS23765 (LGQ10_23765) - 5191369..5192391 (-) 1023 WP_226523379.1 outer membrane protein assembly factor BamD -
  LGQ10_RS23770 (LGQ10_23770) rluD 5192542..5193504 (+) 963 WP_058436680.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LGQ10_RS23775 (LGQ10_23775) pgeF 5193501..5194226 (+) 726 WP_226523380.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49174.81 Da        Isoelectric Point: 9.4672

>NTDB_id=613075 LGQ10_RS23755 WP_226523377.1 5189403..5190734(-) (pilR) [Pseudomonas sp. L5B5]
MSPRQTVLVVDGTREVRALVEITLGRMRLHTRSACTLREARDHLRQYRFDFCLTDLHLPDGSGLELLKHIRQDHSRVPVA
LLSDDTSQQATVSALRAGACDLLHKPLDPKRLRALIDTQLKLPAPREAETSKRLLGSSPPMAALRHQISKLAPSLASVYI
TGESGSGKERVARLIHDLSPRAGQAFIAVNCAAIPATLMESEFFGHRKGSFSGALADQPGLFMAAHGGTLFLDEVAELPL
AMQVKLLRALQERSVRAVGSQTEKAVDVRILCATHQALGHQVEAGHFRQDLYYRLNVIELRVPPLRERPADIAPLARHIL
QRLATRSGQPVVELRAQALQALETYDFPGNVRELENLLERAQTLCEGQWIELADLNLPSAVQLEPPPTSAPTPFDLALHL
QQVERQLLLQALEACRWNRTAAARRLGLSLRSMRYRLKKLGLD

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=613075 LGQ10_RS23755 WP_226523377.1 5189403..5190734(-) (pilR) [Pseudomonas sp. L5B5]
ATGAGCCCCCGACAAACCGTGCTGGTGGTCGATGGGACCCGGGAAGTCCGCGCCCTTGTGGAAATCACCCTGGGTCGAAT
GCGCCTGCACACCCGCAGCGCCTGTACCTTGCGGGAAGCCCGCGACCACCTGCGGCAGTATCGCTTCGACTTCTGCCTGA
CCGACCTGCACCTGCCGGACGGCAGCGGCCTTGAGCTGCTGAAACACATACGCCAGGATCACTCCCGCGTTCCCGTGGCG
CTGCTAAGTGACGATACCAGCCAGCAGGCCACTGTCAGCGCCTTGCGGGCCGGGGCTTGCGACTTGCTGCACAAACCGCT
GGACCCCAAGCGGCTGAGGGCGCTGATCGACACCCAACTCAAGCTCCCAGCGCCTCGAGAAGCCGAAACGAGCAAGCGAC
TGCTGGGAAGCTCGCCCCCCATGGCGGCCCTGCGCCATCAAATCAGCAAGCTGGCACCCAGCCTCGCGTCGGTCTACATC
ACCGGTGAGTCCGGCAGCGGCAAGGAGCGAGTCGCCCGCCTGATCCACGATCTGAGCCCCAGGGCTGGGCAGGCATTCAT
TGCCGTCAACTGTGCAGCAATCCCTGCGACGCTGATGGAAAGCGAGTTCTTCGGCCACCGCAAAGGCAGTTTCAGCGGCG
CCCTGGCGGATCAGCCCGGGCTGTTCATGGCCGCCCATGGGGGCACCTTGTTTCTCGACGAGGTCGCCGAGCTGCCGCTG
GCCATGCAGGTAAAGCTCCTGCGCGCCCTGCAGGAAAGGTCCGTGCGCGCGGTAGGCAGCCAGACGGAGAAAGCCGTGGA
TGTACGGATTCTTTGCGCCACCCACCAGGCCCTTGGACACCAGGTGGAGGCCGGGCACTTCCGTCAGGATCTGTACTATC
GCCTGAATGTCATCGAGCTGCGGGTCCCGCCGCTGCGCGAGCGTCCTGCCGATATTGCTCCGCTGGCCCGGCATATCCTG
CAACGCCTGGCCACCCGCAGCGGCCAGCCCGTCGTCGAGCTTCGCGCACAAGCGCTGCAAGCCCTGGAAACCTACGATTT
TCCTGGCAACGTACGCGAGCTGGAGAATCTGCTGGAGCGGGCCCAGACCCTTTGCGAAGGGCAATGGATAGAGTTGGCGG
ACCTGAATCTGCCCAGCGCCGTGCAACTCGAGCCCCCGCCGACATCCGCCCCTACACCCTTCGACCTGGCGCTGCACCTG
CAGCAAGTGGAACGCCAGTTGCTGCTCCAGGCCCTGGAAGCCTGTCGCTGGAACCGCACGGCGGCTGCCCGGCGACTGGG
GCTTTCATTGCGCTCGATGCGGTATCGCCTGAAGAAGCTCGGGCTAGACTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-300)

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.497

100

0.605
  pilR Acinetobacter baumannii strain A118

45.098

100

0.467
  luxO Vibrio cholerae strain A1552

38.375

100

0.384