Detailed information NTG0613060

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LGQ10_RS10110
• Genome accession: NZ_CP084742
• Coordinates: 2249209..2251440 (-)
• Length: 743 a.a.
• NCBI ID: WP_226525471.1
• Uniprot ID: -
• Organism: Pseudomonas sp. L5B5
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2244209..2256440

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGQ10_RS10075 (LGQ10_10075)	murB	2244578..2245603 (-)	1026	WP_226525469.1	UDP-N-acetylmuramate dehydrogenase	-
LGQ10_RS10080 (LGQ10_10080)	-	2245600..2246064 (-)	465	WP_058437368.1	low molecular weight protein-tyrosine-phosphatase	-
LGQ10_RS10085 (LGQ10_10085)	kdsB	2246064..2246828 (-)	765	WP_058437369.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LGQ10_RS10090 (LGQ10_10090)	-	2246825..2247010 (-)	186	WP_058437370.1	Trm112 family protein	-
LGQ10_RS10095 (LGQ10_10095)	lpxK	2247036..2248046 (-)	1011	WP_058437371.1	tetraacyldisaccharide 4'-kinase	-
LGQ10_RS10100 (LGQ10_10100)	-	2248046..2248474 (-)	429	WP_226525470.1	ExbD/TolR family protein	-
LGQ10_RS10105 (LGQ10_10105)	exbB	2248471..2249106 (-)	636	WP_058438767.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LGQ10_RS10110 (LGQ10_10110)	comA	2249209..2251440 (-)	2232	WP_226525471.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LGQ10_RS10115 (LGQ10_10115)	-	2251581..2252093 (+)	513	WP_058436633.1	DUF2062 domain-containing protein	-
LGQ10_RS10120 (LGQ10_10120)	-	2252144..2252923 (-)	780	WP_058436634.1	ABC transporter permease	-
LGQ10_RS10125 (LGQ10_10125)	-	2252920..2253852 (-)	933	WP_058436635.1	ABC transporter ATP-binding protein	-
LGQ10_RS10130 (LGQ10_10130)	-	2253985..2254608 (-)	624	WP_058436636.1	glutathione S-transferase family protein	-
LGQ10_RS10135 (LGQ10_10135)	-	2254651..2255310 (-)	660	WP_058436637.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81676.81 Da
• Isoelectric Point: 10.9592

>NTDB_id=613060 LGQ10_RS10110 WP_226525471.1 2249209..2251440(-) (comA) [Pseudomonas sp. L5B5]
MRTGMLALAAGLLAMGFLPVLPPGWSLLAMSVLALMLLPFRTHPVAFFLFGFTWACACAQWALDDRLVSRLDGQTRWLEG
RVTGLPEASAGVVRFELHNAQSRRERLPRLMRLSWRDGPPVRSGERWRLAVTLRRPVGMLNLQGFDYEAWLLARRVGAIG
TVKDGHLQAPAHGAWRDRLRQRLLAVEAHGRAGGLAALVMGDGSGLAREDWQLLQDTGTVHLMVISGQHISLLAGVIYLA
VAGLARLGVWPARWPWLPWACALGFLGALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGTWWPLLLALDAVLLFEPL
ASLQPGFWLSFAAVAVLVFTFAGRLGTWRWWQSWTRAQWLVAIGLLPAMLALGLPISVSGPLANLLAVPWISFLVLPPAL
LGCLLLPVPAVGEGLLWLAGGLLDWLFGWLGVVARWCPAWVAPLLPGWVWGLGSLGALLLLLPPGVPLRILGWPLLLLVV
WPPPQRVPHGQAEVWQLDVGQGLSFILRTRNHAMLYDAGARSGDFDLGERVVVPTLHRLGIRQLDLMLLSHADNDHAGGA
LAVQRALPVRLVRSGEPQALPPALGARPCESGASWQWDGVRFSQWQWDQARDGNQASCVLQVEARGERLLLTGDIDIHAE
KALLDSPLALRTQWLQAPHHGSRTSSSRALLLRLQPEAVLVSRGRGNAYGHPHPQVVARYRDLGVPLYDSAEQGALRVQL
GTFGSVYSVRGQRRFWREAPTMP

Nucleotide

• Length: 2232 bp

>NTDB_id=613060 LGQ10_RS10110 WP_226525471.1 2249209..2251440(-) (comA) [Pseudomonas sp. L5B5]
ATGCGCACAGGGATGCTGGCATTGGCTGCGGGGCTGCTGGCAATGGGTTTTCTGCCGGTCTTGCCACCGGGCTGGTCGTT
GCTGGCGATGTCGGTGCTGGCCTTGATGCTGCTGCCATTTCGTACACATCCGGTGGCATTTTTCCTATTCGGTTTCACCT
GGGCCTGTGCTTGTGCTCAGTGGGCGCTCGACGATCGCCTGGTATCCCGCCTGGATGGGCAGACTCGCTGGCTGGAGGGG
CGGGTCACCGGCTTGCCGGAGGCGAGTGCGGGGGTGGTGCGTTTCGAACTGCACAATGCCCAGTCCCGGCGTGAGCGCCT
GCCACGGCTGATGCGCCTGAGCTGGCGCGACGGGCCGCCGGTGCGCAGCGGCGAGCGATGGCGCCTGGCGGTCACCTTGC
GACGTCCCGTGGGGATGCTCAACCTGCAGGGTTTCGACTACGAGGCCTGGTTGTTGGCCCGGCGAGTCGGCGCTATCGGT
ACGGTCAAGGACGGCCATCTGCAGGCGCCGGCCCATGGCGCCTGGCGCGACCGCCTGCGCCAGCGCTTGCTGGCAGTCGA
GGCCCATGGCCGGGCCGGCGGCCTGGCGGCCCTGGTGATGGGTGATGGCTCCGGGCTGGCGCGTGAAGACTGGCAACTGC
TGCAAGACACTGGAACGGTGCACCTGATGGTCATTTCGGGGCAGCACATCAGCCTTCTGGCCGGGGTGATCTACCTCGCC
GTGGCGGGGCTGGCACGGCTGGGCGTATGGCCGGCACGCTGGCCCTGGCTGCCCTGGGCCTGTGCCCTGGGGTTTCTCGG
TGCATTGGGGTATGGCTTGCTGGCGGGGTTCGATGTGCCGGTGCAGCGTGCCTGCGTAATGGTGGCCCTGGTCCTGCTCT
GGCGCTTGCGTTTCCGTCACCTGGGCACTTGGTGGCCATTGCTGCTGGCGCTCGATGCGGTGCTGCTGTTCGAGCCCCTG
GCCAGCTTGCAACCCGGGTTCTGGTTGTCATTCGCGGCGGTGGCGGTGCTGGTCTTCACCTTTGCCGGTCGCCTGGGGAC
CTGGCGCTGGTGGCAGAGCTGGACCCGTGCCCAGTGGCTGGTCGCGATCGGCCTGTTGCCTGCCATGCTGGCCCTGGGCC
TGCCCATCAGCGTGAGTGGCCCGCTGGCCAATCTGTTGGCCGTCCCCTGGATCAGCTTCCTGGTGCTGCCACCGGCCTTG
CTGGGATGCCTGTTGCTGCCTGTACCCGCGGTGGGCGAGGGTTTGCTGTGGCTGGCCGGCGGATTGCTGGACTGGCTGTT
TGGTTGGCTGGGCGTTGTCGCCCGATGGTGCCCCGCCTGGGTAGCGCCGCTGCTTCCCGGCTGGGTCTGGGGGCTGGGCA
GCCTGGGGGCGCTGTTGCTGCTGTTGCCCCCGGGCGTGCCATTGCGGATCCTGGGCTGGCCGTTGTTGCTGCTGGTGGTG
TGGCCGCCGCCGCAGCGGGTGCCCCATGGCCAGGCCGAGGTCTGGCAGCTGGATGTGGGGCAGGGCTTGTCGTTCATCCT
GCGTACCCGTAATCACGCGATGCTGTATGACGCCGGCGCTCGCAGCGGCGACTTCGACCTGGGCGAGCGAGTGGTGGTGC
CGACCCTGCACCGGCTGGGTATCCGGCAACTGGACCTGATGCTGCTCAGTCATGCGGATAACGATCACGCCGGTGGTGCC
CTGGCGGTGCAGCGTGCGCTGCCGGTGCGCCTGGTGCGCAGTGGCGAGCCCCAGGCCTTGCCGCCTGCCCTGGGTGCCAG
GCCCTGCGAGTCCGGGGCGAGCTGGCAATGGGATGGCGTGCGTTTCAGCCAGTGGCAATGGGACCAGGCCCGCGACGGCA
ACCAGGCTTCCTGCGTCCTGCAGGTCGAGGCCCGTGGCGAGCGCTTGCTGCTCACGGGCGATATCGACATCCATGCCGAG
AAGGCCTTGCTCGACAGCCCGCTGGCGCTGCGCACCCAATGGCTGCAGGCGCCGCACCATGGCAGCCGGACTTCGTCATC
CCGGGCCCTGTTGCTACGGTTGCAGCCCGAAGCGGTGCTGGTGTCCCGAGGTCGAGGCAATGCCTACGGCCATCCACATC
CACAGGTGGTGGCGCGGTATCGGGACTTGGGCGTGCCTCTTTATGACAGTGCCGAGCAAGGGGCGCTGCGGGTGCAGCTA
GGAACCTTCGGGTCTGTCTACAGCGTGCGGGGGCAGCGGCGTTTCTGGCGCGAGGCGCCAACAATGCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-462)

• Domain of unknown function (DUF4131) (DUF4131) (20-165)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.738	96.501	0.615
comA	Ralstonia pseudosolanacearum GMI1000	33.49	100	0.384