Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LGQ10_RS10105 Genome accession   NZ_CP084742
Coordinates   2248471..2249106 (-) Length   211 a.a.
NCBI ID   WP_058438767.1    Uniprot ID   -
Organism   Pseudomonas sp. L5B5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2243471..2254106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ10_RS10070 (LGQ10_10070) - 2243865..2244335 (-) 471 WP_058437366.1 (2Fe-2S)-binding protein -
  LGQ10_RS10075 (LGQ10_10075) murB 2244578..2245603 (-) 1026 WP_226525469.1 UDP-N-acetylmuramate dehydrogenase -
  LGQ10_RS10080 (LGQ10_10080) - 2245600..2246064 (-) 465 WP_058437368.1 low molecular weight protein-tyrosine-phosphatase -
  LGQ10_RS10085 (LGQ10_10085) kdsB 2246064..2246828 (-) 765 WP_058437369.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LGQ10_RS10090 (LGQ10_10090) - 2246825..2247010 (-) 186 WP_058437370.1 Trm112 family protein -
  LGQ10_RS10095 (LGQ10_10095) lpxK 2247036..2248046 (-) 1011 WP_058437371.1 tetraacyldisaccharide 4'-kinase -
  LGQ10_RS10100 (LGQ10_10100) - 2248046..2248474 (-) 429 WP_226525470.1 ExbD/TolR family protein -
  LGQ10_RS10105 (LGQ10_10105) exbB 2248471..2249106 (-) 636 WP_058438767.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LGQ10_RS10110 (LGQ10_10110) comA 2249209..2251440 (-) 2232 WP_226525471.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LGQ10_RS10115 (LGQ10_10115) - 2251581..2252093 (+) 513 WP_058436633.1 DUF2062 domain-containing protein -
  LGQ10_RS10120 (LGQ10_10120) - 2252144..2252923 (-) 780 WP_058436634.1 ABC transporter permease -
  LGQ10_RS10125 (LGQ10_10125) - 2252920..2253852 (-) 933 WP_058436635.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23003.15 Da        Isoelectric Point: 7.4248

>NTDB_id=613059 LGQ10_RS10105 WP_058438767.1 2248471..2249106(-) (exbB) [Pseudomonas sp. L5B5]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAHVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=613059 LGQ10_RS10105 WP_058438767.1 2248471..2249106(-) (exbB) [Pseudomonas sp. L5B5]
GTGTGGGAATTGGTCAAATCCGGCGGTTGGATGATGTTGCCGATCATCCTGAGTTCCATCGCTGCCGTGGGCATCATTGC
CGAGCGCTTGTGGACCCTGCGGGCCAGCCGAGTCACACCTCCTCACTTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGCGCCGATTCGCCCCTGGGCGAGATCCTGGCGGCAGGCCTGGCCAAC
TCCAGGCATGGCCGCGAGATCATGAAGGAGTGCATTGAAGAAGCGGCCGCCCGGGTCATTCACGAGCTGGAGCGCTACCT
CAATGCCCTTGGCACCATCGCCGCGATGGCGCCCCTGCTGGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGGTCGGGCATGACCTCCAACGCCCATGTATTGGCCGGTGGTATTTCCAAGGCACTGATCACGACCGCT
GCGGGCCTGATGGTGGGTATTCCAGCGGTGTTTTTCCACCGCTTCCTGCAGCGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877