Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LGV34_RS10940 Genome accession   NZ_CP084719
Coordinates   2224456..2224959 (-) Length   167 a.a.
NCBI ID   WP_037575408.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain 76ME     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2219456..2229959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV34_RS10905 (LGV34_10910) - 2219616..2219918 (-) 303 WP_037575417.1 PadR family transcriptional regulator -
  LGV34_RS10910 (LGV34_10915) - 2220080..2220460 (+) 381 WP_037575414.1 iron chaperone -
  LGV34_RS10915 (LGV34_10920) - 2220745..2221761 (+) 1017 WP_107367114.1 methionine ABC transporter ATP-binding protein -
  LGV34_RS10920 (LGV34_10925) - 2221763..2222422 (+) 660 WP_268216832.1 methionine ABC transporter permease -
  LGV34_RS10925 (LGV34_10930) gmpC 2222435..2223277 (+) 843 WP_107367116.1 dipeptide ABC transporter glycylmethionine-binding lipoprotein -
  LGV34_RS10930 (LGV34_10935) - 2223347..2224021 (-) 675 WP_268216833.1 CPBP family intramembrane glutamic endopeptidase -
  LGV34_RS10935 (LGV34_10940) rpsR 2224170..2224412 (-) 243 WP_037565082.1 30S ribosomal protein S18 -
  LGV34_RS10940 (LGV34_10945) ssbA 2224456..2224959 (-) 504 WP_037575408.1 single-stranded DNA-binding protein Machinery gene
  LGV34_RS10945 (LGV34_10950) rpsF 2224983..2225279 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  LGV34_RS10950 (LGV34_10955) - 2225593..2226228 (+) 636 WP_105963088.1 NAD(P)-dependent oxidoreductase -
  LGV34_RS10955 (LGV34_10960) ychF 2226435..2227532 (-) 1098 WP_107398957.1 redox-regulated ATPase YchF -
  LGV34_RS10960 (LGV34_10965) - 2227539..2227745 (-) 207 WP_037575399.1 DUF951 domain-containing protein -
  LGV34_RS10965 (LGV34_10970) - 2227781..2228671 (-) 891 WP_037575395.1 mechanosensitive ion channel family protein -
  LGV34_RS10970 (LGV34_10975) - 2228695..2229522 (-) 828 WP_268216834.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18556.10 Da        Isoelectric Point: 4.9056

>NTDB_id=612747 LGV34_RS10940 WP_037575408.1 2224456..2224959(-) (ssbA) [Staphylococcus chromogenes strain 76ME]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQGFGGQQQGQNSSYQNNNSSSNNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=612747 LGV34_RS10940 WP_037575408.1 2224456..2224959(-) (ssbA) [Staphylococcus chromogenes strain 76ME]
ATGCTTAACAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGCGTAGC
GACTTTCACATTAGCTGTGAATCGTACGTTTACAAACAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAGAACGTGAGCAATTTCTTGTTCAAGGGAAGTCTGGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAATCAAGAAGGCCGACGTGTCTATGTGACGGAGGTCGTTTGTGACAGTGTTCAATTCCTTGAACCCAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAGGATTCGGTGGACAACAACAAGGTC
AAAATTCGTCATATCAAAATAACAATTCATCATCTAACAATGATAACCCATTTGCGAATGCGAATGGTCCTATCGACATT
AGCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383