Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LG197_RS12600 Genome accession   NZ_CP084714
Coordinates   2753828..2756041 (+) Length   737 a.a.
NCBI ID   WP_247727008.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain P1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2748828..2761041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG197_RS12580 (LG197_12580) - 2750693..2751316 (+) 624 WP_024086519.1 glutathione S-transferase -
  LG197_RS12585 (LG197_12585) - 2751461..2752393 (+) 933 WP_247727006.1 ABC transporter ATP-binding protein -
  LG197_RS12590 (LG197_12590) - 2752390..2753169 (+) 780 WP_003260104.1 ABC transporter permease -
  LG197_RS12595 (LG197_12595) - 2753179..2753685 (-) 507 Protein_2458 DUF2062 domain-containing protein -
  LG197_RS12600 (LG197_12600) comA 2753828..2756041 (+) 2214 WP_247727008.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LG197_RS12605 (LG197_12605) exbB 2756372..2757007 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LG197_RS12610 (LG197_12610) - 2757004..2757438 (+) 435 WP_023662669.1 biopolymer transporter ExbD -
  LG197_RS12615 (LG197_12615) lpxK 2757438..2758439 (+) 1002 WP_182328557.1 tetraacyldisaccharide 4'-kinase -
  LG197_RS12620 (LG197_12620) - 2758484..2758669 (+) 186 WP_011532874.1 Trm112 family protein -
  LG197_RS12625 (LG197_12625) kdsB 2758666..2759430 (+) 765 WP_013971566.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LG197_RS12630 (LG197_12630) - 2759430..2759894 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  LG197_RS12635 (LG197_12635) murB 2759891..2760910 (+) 1020 WP_023662429.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79517.52 Da        Isoelectric Point: 11.0225

>NTDB_id=612683 LG197_RS12600 WP_247727008.1 2753828..2756041(+) (comA) [Pseudomonas asiatica strain P1]
MRTGMFALALGLLCLGFLPALPSVGWLVLLAVVGGLGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVVGGWRDTLRQRLLAVEANGRQAAMVALVLGDGAGLARKDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGATLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLVYCFSARLGNWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLSGIGEALLWLAGGLLDVLFRLLALAAQQPAWLPPALPLWAWLLVCLGALLVLMPRGVPLRGLGGVMLLALWV
PRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAGA
IIRGLPVKRVIGGEVLDEMRLQPCASGEQWTWDGVRFSLWRWADGQSSNDRSCALLVEAQGERLLLAGDMEAGAERAWLA
ATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRLGE
VESVRRQRRFWRDAGGG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=612683 LG197_RS12600 WP_247727008.1 2753828..2756041(+) (comA) [Pseudomonas asiatica strain P1]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGTCTGGGCTTTCTCCCCGCATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGTCGGTGGCCTCGGCCTGTTCACCCGGCTGTGGCCGCTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCGCTGGATGACCGCCTGGCCACCGGGCTGGATGGTCGCACCCTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGGCCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGTCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCAATGGCCGGCAGGCAGCGATGGTGGCGCTGGTGCTTGGCGACGGGGCGGGCCTGGCCCGGAAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGTCTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGACCTTGCCGTTGTTGCTGGCGCTGGTTGCCGTGCTGCTGGTGGAGCCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTATCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAA
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGCTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCGTGGGTCAGCTTGGCAGTGCTGCCATTGGCGTTG
CTGGGCACTTTGCTGCTGCCGTTGAGCGGGATAGGGGAGGCGCTGCTCTGGCTGGCGGGTGGTTTGCTTGATGTGCTTTT
CCGGCTGCTGGCGCTGGCGGCGCAGCAGCCGGCGTGGCTGCCACCAGCCCTGCCGTTGTGGGCCTGGCTGCTGGTGTGCC
TGGGTGCGCTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGGGTA
CCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCGGTGCTGTTGCGCAC
TCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGAGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGACCT
TGCGCAAGCTGGGGGTGGGCAGCCTGGACTTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGTGCA
ATCATACGTGGCCTGCCGGTCAAGCGGGTGATCGGCGGCGAAGTGCTGGATGAAATGCGACTGCAACCTTGTGCCAGTGG
CGAGCAATGGACGTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCTGATGGACAGAGCAGCAATGACCGCTCCTGTG
CGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGATATGGAAGCCGGTGCCGAACGGGCCTGGCTGGCG
GCCACAGAAGCGCCGCGGATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCATCCG
CGCCACGGCGCCGCGCGGGGTACTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCGAAC
GTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGGGAA
GTCGAGAGTGTGCGCCGACAGCGGCGTTTCTGGAGGGATGCGGGCGGTGGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-673)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.558

0.583
  comA Ralstonia pseudosolanacearum GMI1000

34.904

100

0.372