Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NP442_RS08985 Genome accession   NZ_CP101922
Coordinates   1861804..1862460 (+) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli strain JCC-EE 7     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1856804..1867460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP442_RS08955 (NP442_08950) dcyD 1857683..1858669 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  NP442_RS08960 (NP442_08955) tcyL 1858684..1859352 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  NP442_RS08965 (NP442_08960) tcyN 1859349..1860101 (+) 753 WP_005758537.1 L-cystine ABC transporter ATP-binding protein TcyN -
  NP442_RS08970 (NP442_08965) sdiA 1860331..1861053 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  NP442_RS08975 (NP442_08970) yecF 1861121..1861345 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  NP442_RS08980 (NP442_08975) yecU 1861332..1861508 (-) 177 WP_001302050.1 protein YecU -
  NP442_RS23335 - 1861546..1861662 (-) 117 WP_001302039.1 hypothetical protein -
  NP442_RS08985 (NP442_08980) letA 1861804..1862460 (+) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  NP442_RS08990 (NP442_08985) uvrC 1862457..1864289 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  NP442_RS08995 (NP442_08990) pgsA 1864346..1864894 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NP442_RS09015 (NP442_09010) - 1865590..1866330 (-) 741 WP_098717297.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=612684 NP442_RS08985 WP_000611338.1 1861804..1862460(+) (letA) [Escherichia coli strain JCC-EE 7]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=612684 NP442_RS08985 WP_000611338.1 1861804..1862460(+) (letA) [Escherichia coli strain JCC-EE 7]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGCGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGCAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACGGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGTGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CATTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491