Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LG197_RS12605 Genome accession   NZ_CP084714
Coordinates   2756372..2757007 (+) Length   211 a.a.
NCBI ID   WP_003259970.1    Uniprot ID   V9UW47
Organism   Pseudomonas asiatica strain P1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2751372..2762007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG197_RS12585 (LG197_12585) - 2751461..2752393 (+) 933 WP_247727006.1 ABC transporter ATP-binding protein -
  LG197_RS12590 (LG197_12590) - 2752390..2753169 (+) 780 WP_003260104.1 ABC transporter permease -
  LG197_RS12595 (LG197_12595) - 2753179..2753685 (-) 507 Protein_2458 DUF2062 domain-containing protein -
  LG197_RS12600 (LG197_12600) comA 2753828..2756041 (+) 2214 WP_247727008.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LG197_RS12605 (LG197_12605) exbB 2756372..2757007 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LG197_RS12610 (LG197_12610) - 2757004..2757438 (+) 435 WP_023662669.1 biopolymer transporter ExbD -
  LG197_RS12615 (LG197_12615) lpxK 2757438..2758439 (+) 1002 WP_182328557.1 tetraacyldisaccharide 4'-kinase -
  LG197_RS12620 (LG197_12620) - 2758484..2758669 (+) 186 WP_011532874.1 Trm112 family protein -
  LG197_RS12625 (LG197_12625) kdsB 2758666..2759430 (+) 765 WP_013971566.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LG197_RS12630 (LG197_12630) - 2759430..2759894 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  LG197_RS12635 (LG197_12635) murB 2759891..2760910 (+) 1020 WP_023662429.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=612684 LG197_RS12605 WP_003259970.1 2756372..2757007(+) (exbB) [Pseudomonas asiatica strain P1]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRVSRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=612684 LG197_RS12605 WP_003259970.1 2756372..2757007(+) (exbB) [Pseudomonas asiatica strain P1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGTCAGTCGCGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGATATGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCTGATTCGCCATTGGGCGAAATCCTTGCCGCCGGCCTGGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCTGCGCCGTATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCTATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9UW47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829