Detailed information NTG0612048

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LF844_RS04465
• Genome accession: NZ_CP084625
• Coordinates: 939083..940420 (-)
• Length: 445 a.a.
• NCBI ID: WP_151131867.1
• Uniprot ID: A0A5J6QFF5
• Organism: Metapseudomonas lalkuanensis strain ACYW.190
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 934083..945420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LF844_RS04450 (LF844_04450)	-	934558..935094 (+)	537	WP_226283533.1	PilX N-terminal domain-containing pilus assembly protein	-
LF844_RS04455 (LF844_04455)	-	935147..938563 (+)	3417	WP_226283534.1	pilus assembly protein	-
LF844_RS04460 (LF844_04460)	-	938560..938976 (+)	417	WP_226283535.1	type IV pilin protein	-
LF844_RS04465 (LF844_04465)	pilR	939083..940420 (-)	1338	WP_151131867.1	sigma-54 dependent transcriptional regulator	Regulator
LF844_RS04470 (LF844_04470)	pilS	940423..942024 (-)	1602	WP_226283536.1	PAS domain-containing sensor histidine kinase	Regulator
LF844_RS04475 (LF844_04475)	-	942014..942250 (-)	237	WP_226283537.1	PP0621 family protein	-
LF844_RS04480 (LF844_04480)	-	942421..944052 (+)	1632	WP_226283538.1	NAD+ synthase	-
LF844_RS04485 (LF844_04485)	-	944113..945132 (-)	1020	WP_226283539.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49524.86 Da
• Isoelectric Point: 5.4635

>NTDB_id=612048 LF844_RS04465 WP_151131867.1 939083..940420(-) (pilR) [Metapseudomonas lalkuanensis strain ACYW.190]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNLKEAREWLGREPFDLCLTDMRLPDGTGLELVQYIQQRHPMVPVAM
ITAYGSLDTAVNALKAGAFDFVTKPVDLGRLRELVNTALRLSSPEEGEAPVDGRLLGSSPPMNALRKQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LAMQVKLLRAIQEKAIRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPLLADSM
LKRLAQQSGLPAASLAPEALDKLKCYRFPGNVRELENMLERAYTLCEDDQIQARDLRLAEASGAAEAGEASLAQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide

• Length: 1338 bp

>NTDB_id=612048 LF844_RS04465 WP_151131867.1 939083..940420(-) (pilR) [Metapseudomonas lalkuanensis strain ACYW.190]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAGTTGCTGGAAATCACCCTCGGCCGGATGAA
GCTCGACACTCGCAGCGCCCGCAACCTCAAGGAGGCCCGCGAATGGCTGGGTCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAATACATCCAGCAGCGGCACCCAATGGTCCCGGTGGCGATG
ATCACCGCCTACGGCAGCCTCGACACCGCCGTGAACGCGCTCAAGGCGGGCGCCTTCGACTTCGTCACCAAGCCGGTGGA
TCTCGGCCGCCTGCGTGAGCTGGTCAACACTGCCCTGCGCCTCAGCTCTCCCGAGGAGGGCGAAGCGCCGGTGGACGGTC
GCCTGCTGGGCAGCTCGCCGCCCATGAACGCCCTGCGCAAGCAGATCCAGAAACTCGCCCGCAGCCAGGCGCCGGTGTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTGGTGGCGCGGCTGATCCACGAGCAGGGTCCCCGCGCAGAGCGCCCCTT
CGTGCCGGTCAACTGCGGCGCCATTCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCG
GCGCGGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTGGACGAAGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAGAAAGCCATTCGCGCCGTGGGCGGACAGCAGGAAGTCGTGGT
CGATGTGCGCATCCTCAGCGCCACCCACAAGGACCTGGCCGCCGAAGTGGCCGCCGGCCGTTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAACTCAGCGTGCCGCCGTTGCGCGAACGCCGCGAAGACATTCCGCTCCTGGCCGACTCCATG
CTCAAGCGCCTGGCACAGCAGAGTGGACTGCCAGCCGCCAGCCTCGCCCCGGAAGCCCTCGACAAACTCAAGTGCTACCG
TTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACACTCTGCGAGGATGACCAGATCCAGGCCC
GCGACCTGCGCCTTGCCGAAGCCAGCGGCGCCGCCGAGGCAGGAGAGGCCAGCCTGGCGCAGATCGACAATCTGGAAGAC
TACCTGGAGGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAAGAAACCCGCTGGAACCGCACCGCCGCAGCCCAGCG
CCTGGGCCTGACCTTCCGCTCGATGCGTTATCGGCTGAAGAAGCTGGGCATAGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

3D structure

• AlphaFold DB: A0A5J6QFF5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	87.865	100	0.879
pilR	Acinetobacter baumannii strain A118	50.327	100	0.519