Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LF844_RS04470 Genome accession   NZ_CP084625
Coordinates   940423..942024 (-) Length   533 a.a.
NCBI ID   WP_226283536.1    Uniprot ID   -
Organism   Metapseudomonas lalkuanensis strain ACYW.190     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 935423..947024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF844_RS04460 (LF844_04460) - 938560..938976 (+) 417 WP_226283535.1 type IV pilin protein -
  LF844_RS04465 (LF844_04465) pilR 939083..940420 (-) 1338 WP_151131867.1 sigma-54 dependent transcriptional regulator Regulator
  LF844_RS04470 (LF844_04470) pilS 940423..942024 (-) 1602 WP_226283536.1 PAS domain-containing sensor histidine kinase Regulator
  LF844_RS04475 (LF844_04475) - 942014..942250 (-) 237 WP_226283537.1 PP0621 family protein -
  LF844_RS04480 (LF844_04480) - 942421..944052 (+) 1632 WP_226283538.1 NAD+ synthase -
  LF844_RS04485 (LF844_04485) - 944113..945132 (-) 1020 WP_226283539.1 outer membrane protein assembly factor BamD -
  LF844_RS04490 (LF844_04490) rluD 945280..946254 (+) 975 WP_151131876.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LF844_RS04495 (LF844_04495) pgeF 946251..946976 (+) 726 WP_151131878.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 58980.83 Da        Isoelectric Point: 7.7639

>NTDB_id=612049 LF844_RS04470 WP_226283536.1 940423..942024(-) (pilS) [Metapseudomonas lalkuanensis strain ACYW.190]
MNADTRPLPTGLSAQGRRIFRLYSLYRLLIGLVLVLLISSEMDDRLLDLARPDLFRNASWFYLILNALIAALVPRPRSMV
QVFSLAVVDVLLLSCLFFAAGGTPSGIANLIVVSVAISNILLRGRIGLLVAAVAAIGLIYLTFYLSISQPEAASQFVQAG
GFGALCFAAALFIQGLSRRLQISETLAEQRAEDVANLEALNAQILERMRTGILVLDPRNQVLLANNGAQALLGKDNLSGQ
ALSSQCPELLESLRQWLANPTLRPQSLQAFADGPTLQPSFVHLQRGGQQNTLVFLEDISQIAQQAQQLKLASLGRLTAGI
AHEIRNPLGAISHAAQLLQESDELQSPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLTRFASEFRTSA
SPNQTLHLSTLGSTLQTRMDPHQLTQVLTNLVQNGLRYSSKKNTEGQVWLKLFRDPESDLPVLEVEDDGEGVPPEQVHNI
FEPFFTTDSKGTGLGLYISRELCESNQARLDYKPREHGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=612049 LF844_RS04470 WP_226283536.1 940423..942024(-) (pilS) [Metapseudomonas lalkuanensis strain ACYW.190]
GTGAACGCTGATACCCGCCCACTCCCGACCGGGCTCAGCGCCCAGGGGCGACGCATCTTCCGCCTCTACAGCCTCTACCG
GCTGCTGATCGGCCTGGTGCTGGTACTCCTGATCTCCAGCGAAATGGACGACCGCCTGCTGGATCTCGCACGGCCCGACC
TGTTCCGCAACGCCAGCTGGTTCTACCTGATCCTGAACGCCCTGATCGCCGCCCTGGTGCCCCGCCCAAGGAGCATGGTG
CAGGTCTTCAGCCTGGCCGTGGTGGATGTATTGCTGCTCTCCTGCCTGTTCTTCGCGGCCGGAGGCACACCGAGCGGCAT
CGCCAACCTCATCGTGGTCTCGGTGGCCATCTCCAATATCCTCCTGCGTGGGCGTATCGGGCTCCTGGTGGCCGCAGTGG
CGGCGATCGGGCTGATCTACCTGACCTTCTACCTCAGCATCAGCCAACCCGAGGCCGCCAGCCAGTTCGTCCAGGCCGGC
GGTTTCGGCGCCTTGTGCTTTGCCGCAGCCCTGTTCATCCAGGGGCTGAGTCGACGCCTGCAGATCAGCGAGACGCTTGC
GGAGCAGCGCGCAGAGGATGTGGCCAACCTGGAGGCGCTGAACGCGCAGATCCTCGAACGCATGCGCACCGGCATCCTGG
TGCTGGACCCTCGCAACCAGGTCCTGCTCGCCAACAATGGCGCCCAGGCCCTGCTGGGCAAGGACAACCTGTCGGGCCAA
GCCCTGAGCAGCCAATGCCCCGAACTGCTGGAAAGCCTGCGGCAATGGCTCGCCAACCCGACCCTTCGCCCACAGAGCCT
CCAGGCATTCGCCGACGGTCCGACGCTGCAACCGAGCTTCGTCCACCTCCAGCGGGGCGGTCAGCAGAATACCCTGGTCT
TCCTCGAGGACATCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAACTCGCCTCCCTTGGCCGCCTGACCGCCGGCATC
GCCCATGAAATCCGCAACCCCCTGGGCGCCATCAGCCACGCAGCCCAGTTGCTGCAGGAGTCGGACGAACTCCAGAGCCC
CGACCGGCGCCTGGCGCAGATCATCCAGGACCACTCGCGGCGCATGAACCTCGTGATCGAGAACGTGCTCCAGCTGTCCC
GCCGTCGCCAGTCGGAACCCCAGCTGCTGGATCTCAAATACTGGCTGACCCGTTTCGCCAGTGAATTCCGCACGTCCGCG
AGCCCCAACCAGACCCTGCACCTGAGCACACTCGGCAGCACGCTGCAGACCCGCATGGACCCGCACCAGCTCACCCAGGT
GCTGACCAACCTGGTGCAGAACGGCCTGCGCTACAGCAGCAAGAAGAACACCGAGGGCCAGGTCTGGCTCAAGTTGTTCC
GCGACCCCGAAAGCGACCTGCCGGTACTGGAAGTGGAAGACGACGGGGAAGGCGTCCCGCCTGAGCAGGTACACAATATC
TTCGAGCCCTTCTTCACCACCGACAGCAAGGGCACGGGCCTCGGCCTGTACATCTCCCGCGAGCTCTGTGAAAGCAACCA
GGCCCGCCTCGACTACAAACCGCGCGAGCACGGCGGCAGCTGCTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCT
GA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(420-526)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.474

97.373

0.647