Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BASU_RS16515 Genome accession   NC_022081
Coordinates   3365018..3365707 (-) Length   229 a.a.
NCBI ID   WP_197538283.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5113     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3360018..3370707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS16480 (BASU_3170) fliW 3360108..3360539 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  BASU_RS16485 (BASU_3171) - 3360569..3361138 (-) 570 WP_007407476.1 DUF6470 family protein -
  BASU_RS16490 (BASU_3172) flgL 3361230..3362147 (-) 918 WP_020956415.1 flagellar hook-associated protein FlgL -
  BASU_RS16495 (BASU_3173) flgK 3362159..3363676 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  BASU_RS16500 (BASU_3174) - 3363692..3364174 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BASU_RS16505 (BASU_3175) flgM 3364189..3364455 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BASU_RS16510 (BASU_3176) - 3364525..3364944 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  BASU_RS16515 (BASU_3177) comFC 3365018..3365707 (-) 690 WP_197538283.1 phosphoribosyltransferase family protein Machinery gene
  BASU_RS16520 (BASU_3178) - 3365713..3365997 (-) 285 WP_007407481.1 competence protein ComFB -
  BASU_RS16525 (BASU_3179) comFA 3366055..3367440 (-) 1386 WP_020956417.1 DEAD/DEAH box helicase Machinery gene
  BASU_RS16530 (BASU_3180) - 3367549..3368397 (-) 849 WP_007407483.1 DegV family protein -
  BASU_RS16535 (BASU_3181) degU 3368495..3369184 (-) 690 WP_020956418.1 two-component system response regulator DegU Regulator
  BASU_RS16540 (BASU_3182) degS 3369261..3370424 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25275.96 Da        Isoelectric Point: 8.2921

>NTDB_id=61139 BASU_RS16515 WP_197538283.1 3365018..3365707(-) (comFC) [Bacillus velezensis UCMB5113]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCVARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSEMLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=61139 BASU_RS16515 WP_197538283.1 3365018..3365707(-) (comFC) [Bacillus velezensis UCMB5113]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGTGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGATGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-60)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment