Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NON14_RS09795 Genome accession   NZ_CP101642
Coordinates   1912432..1913043 (-) Length   203 a.a.
NCBI ID   WP_011374075.1    Uniprot ID   Q38YR0
Organism   Latilactobacillus sakei strain HRB10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1907432..1918043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS09775 (NON14_09745) arcA 1908376..1909611 (-) 1236 WP_011374079.1 arginine deiminase -
  NON14_RS09780 (NON14_09750) - 1909818..1910339 (-) 522 WP_041820731.1 GNAT family N-acetyltransferase -
  NON14_RS09785 (NON14_09755) queA 1910366..1911397 (-) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  NON14_RS09790 (NON14_09760) ruvB 1911412..1912419 (-) 1008 WP_011374076.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NON14_RS09795 (NON14_09765) ruvA 1912432..1913043 (-) 612 WP_011374075.1 Holliday junction branch migration protein RuvA Machinery gene
  NON14_RS09800 (NON14_09770) - 1913454..1914017 (-) 564 WP_011374074.1 TIGR00730 family Rossman fold protein -
  NON14_RS09805 (NON14_09775) - 1914030..1914575 (-) 546 WP_011374073.1 nucleoside triphosphate pyrophosphatase -
  NON14_RS09810 (NON14_09780) hexB 1914575..1916533 (-) 1959 WP_409043720.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22143.35 Da        Isoelectric Point: 4.8129

>NTDB_id=611007 NON14_RS09795 WP_011374075.1 1912432..1913043(-) (ruvA) [Latilactobacillus sakei strain HRB10]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIFVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=611007 NON14_RS09795 WP_011374075.1 1912432..1913043(-) (ruvA) [Latilactobacillus sakei strain HRB10]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTACGTTGTTTTGGAAGTCCAAGGAATTGGCTATCA
ATTGCAAGTTGCCAACCCATATCGGTATACGGAATCGATGAGCGAAGTGGTTCAAATTTTTGTCCACCAAGCGGTACGCG
ATACTGATATTACGCTTTTTGGCTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGAATT
GGTCCCAAGAGTGCCTTGGCAATTTTGGCTAACAGTGATCATTCTGGCTTAATTCAGGCGATTATGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGCGTTGGGAAGAAGACGGCCCAACAGATTGCCTTAGATCTTAAAGGTAAGTTAGGTGATC
TAGAACAAAGCGCAACGTTAGTCGGCCAAACGGCAATTGATTTAGGCAGCCAAGGCGATTCACCTGAATTAAGTGATGCA
CTAGCGGCCTTGAGTGCGCTTGGTTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAATATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(157-201)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

48.293

100

0.488
  ruvA Streptococcus pneumoniae R6

48.293

100

0.488
  ruvA Streptococcus pneumoniae D39

48.293

100

0.488
  ruvA Bacillus subtilis subsp. subtilis str. 168

46.078

100

0.463