Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M493_RS17075 Genome accession   NC_022080
Coordinates   3430033..3430527 (-) Length   164 a.a.
NCBI ID   WP_020961642.1    Uniprot ID   A0A1V9BBH5
Organism   Geobacillus genomosp. 3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3425033..3435527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M493_RS17055 (M493_18270) rplI 3426034..3426483 (-) 450 WP_020961638.1 50S ribosomal protein L9 -
  M493_RS17060 (M493_18275) - 3426480..3428456 (-) 1977 WP_020961639.1 DHH family phosphoesterase -
  M493_RS17065 (M493_18280) - 3428503..3429429 (-) 927 WP_020961640.1 YybS family protein -
  M493_RS17070 (M493_18285) rpsR 3429511..3429747 (-) 237 WP_020961641.1 30S ribosomal protein S18 -
  M493_RS17075 (M493_18290) ssbA 3430033..3430527 (-) 495 WP_020961642.1 single-stranded DNA-binding protein Machinery gene
  M493_RS17080 (M493_18295) rpsF 3430557..3430844 (-) 288 WP_020961643.1 30S ribosomal protein S6 -
  M493_RS17085 (M493_18300) ychF 3431070..3432170 (-) 1101 WP_020961644.1 redox-regulated ATPase YchF -
  M493_RS17090 (M493_18302) - 3432295..3434314 (-) 2020 Protein_3359 molybdopterin-dependent oxidoreductase -
  M493_RS17095 (M493_18305) - 3434387..3434584 (-) 198 WP_020961645.1 DUF951 domain-containing protein -
  M493_RS17100 (M493_18310) - 3434605..3435504 (-) 900 WP_020961646.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18378.29 Da        Isoelectric Point: 4.8466

>NTDB_id=61075 M493_RS17075 WP_020961642.1 3430033..3430527(-) (ssbA) [Geobacillus genomosp. 3]
MINRVILVGRLTKDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADNVQFLEPKGSNEQRGAAAGGYYGDPFPFGQDQNHRHPNEKGFGRIDEDPFANDGQTIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=61075 M493_RS17075 WP_020961642.1 3430033..3430527(-) (ssbA) [Geobacillus genomosp. 3]
ATGATTAACCGTGTCATTTTAGTCGGCAGGTTAACGAAAGATCCGGAGTTGCGCTACACTCCAAGCGGAGTGGCTGTTGC
CACATTTACGCTCGCGGTCAACCGCCCGTTCACGAACCAGCAGGGCGAGCGGGAAGCTGACTTTATTCAATGTGTCGTCT
GGCGCCGCCAAGCGGAAAACGTCGCCAACTTCTTGAAAAAAGGAAGCTTGGCCGGAGTGGACGGCCGGCTGCAAACCCGC
AGTTATGAAAATCAAGAAGGACGGCGCGTGTATGTAACGGAAGTGGTGGCTGATAACGTCCAATTTCTTGAGCCAAAAGG
AAGCAACGAGCAGCGGGGGGCAGCAGCAGGCGGCTACTATGGGGATCCGTTCCCATTCGGACAAGATCAGAACCACCGTC
ATCCGAACGAAAAAGGATTTGGCCGCATCGATGAAGATCCTTTCGCCAATGACGGCCAGACGATCGATATTTCCGATGAT
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9BBH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68

100

0.726
  ssb Latilactobacillus sakei subsp. sakei 23K

59.412

100

0.616
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

64.634

0.421

Multiple sequence alignment