Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LDO52_RS09040 Genome accession   NZ_CP084300
Coordinates   1852215..1852922 (-) Length   235 a.a.
NCBI ID   WP_005171629.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1847215..1857922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS09030 (LDO52_09030) - 1849855..1850606 (+) 752 WP_373685564.1 IS5 family transposase -
  LDO52_RS09035 (LDO52_09035) - 1850974..1852023 (-) 1050 WP_225552744.1 NADP(H)-dependent aldo-keto reductase -
  LDO52_RS09040 (LDO52_09040) crp 1852215..1852922 (-) 708 WP_005171629.1 cAMP-activated global transcriptional regulator CRP Regulator
  LDO52_RS09045 (LDO52_09045) - 1853070..1853492 (+) 423 WP_005171632.1 OsmC family protein -
  LDO52_RS09050 (LDO52_09050) - 1853581..1854618 (-) 1038 WP_180075751.1 metallophosphoesterase -
  LDO52_RS09055 (LDO52_09055) - 1855173..1855856 (-) 684 WP_086044901.1 metallophosphoesterase -
  LDO52_RS09060 (LDO52_09060) - 1856774..1857115 (-) 342 WP_004282243.1 helix-turn-helix domain-containing protein -
  LDO52_RS09065 (LDO52_09065) - 1857414..1857626 (-) 213 WP_225552746.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26438.18 Da        Isoelectric Point: 4.6679

>NTDB_id=610521 LDO52_RS09040 WP_005171629.1 1852215..1852922(-) (crp) [Acinetobacter pseudolwoffii strain XMC5X702]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEVNPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDVSLEEPETVSAGELEDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=610521 LDO52_RS09040 WP_005171629.1 1852215..1852922(-) (crp) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCGCTTTCTCCGGGGCAATTACCAGAATCCGTGAAAGCACTGTTAAA
ACGTGCATATATTAATCGTTATCCAAAACGTACTACGATCATTGATGCAGGATCAGAATCTAAATCTTTGTATTTGATTT
TGAAGGGGTCTGTATCCATCATTCTTCGTGAAGATGATGATCGTGAGATTGTCGTGGCATATTTAAATCCAGGTGACTTT
TTTGGGGAAATGGGTTTATTTGAGGTAAATCCACAACGTACTGCAGAAGTTCGTACACGTGATGTGTGTGAAATTGCTGA
AATCACCTATGAAAATTTTCATGAAATCAGCAAGCAATATCCTGATCTGAGCTATGCGGTATTTGCTCAGCTGGTACGCC
GTCTGAAAAATACCACACGTAAAGTGACTGATCTGGCATTCATTGATGTTTCAGGCCGTATTGCACGTTGCCTGATCGAC
TTGTCTTCTCAGCCTGAGGCGATGATTTTACCAAATGGCCGTCAGATTCGTATTACTCGTCAGGAAATTGGCCGTATTGT
CGGTTGTTCCCGCGAAATGGTCGGCCGTGTACTGAAGACACTTGAAGAACAGGGTATGATTGAAACTGATGGTAAAGCCA
TTCTGATTTTCGATGTTTCTCTGGAGGAGCCAGAAACGGTCAGTGCCGGTGAGCTCGAAGACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.619

94.894

0.898
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

47.668

82.128

0.391