Detailed information NTG0610517

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LDO52_RS06820
• Genome accession: NZ_CP084300
• Coordinates: 1398075..1399271 (+)
• Length: 398 a.a.
• NCBI ID: WP_225554142.1
• Uniprot ID: -
• Organism: Acinetobacter pseudolwoffii strain XMC5X702
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1393075..1404271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO52_RS06805 (LDO52_06805)	-	1394406..1395518 (+)	1113	WP_005170751.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-
LDO52_RS06810 (LDO52_06810)	-	1395729..1396259 (+)	531	WP_005097004.1	hypothetical protein	-
LDO52_RS06815 (LDO52_06815)	-	1396774..1397823 (+)	1050	WP_100535139.1	3-deoxy-7-phosphoheptulonate synthase	-
LDO52_RS06820 (LDO52_06820)	pilU	1398075..1399271 (+)	1197	WP_225554142.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LDO52_RS06825 (LDO52_06825)	-	1399327..1400511 (-)	1185	WP_225554143.1	MFS transporter	-
LDO52_RS06830 (LDO52_06830)	gcvH	1400754..1401128 (-)	375	WP_005097000.1	glycine cleavage system protein GcvH	-
LDO52_RS06835 (LDO52_06835)	-	1401211..1402239 (-)	1029	WP_005096998.1	AraC family transcriptional regulator	-
LDO52_RS06840 (LDO52_06840)	-	1402391..1402840 (-)	450	WP_005096996.1	MaoC/PaaZ C-terminal domain-containing protein	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45042.65 Da
• Isoelectric Point: 6.8278

>NTDB_id=610517 LDO52_RS06820 WP_225554142.1 1398075..1399271(+) (pilU) [Acinetobacter pseudolwoffii strain XMC5X702]
MFATELLEEARKFMHHMLTKVVEYGGSDLFITADFPPSIKHQGLMKPFGQQELTAEKTKLFAYSLMNEKQRKEFETELEC
NFAITVPGVSRFRVNVFQQQLNVGMVIRTITAEIPNFQKLKLPDSLKHVIMEKRGLVLVVGGAGSGKSTSLAAMIDYRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLQ
SNNANQTLDRIINFFPEERRNQLLMDLSSNMKAIISQRLIRTQDGKGRRAAIEIMLNTPLISDLILKGEFHELKAIMAKS
RELGMQTFDQALFELYNQGEISYEEALRNADSTNELRLQIKLKSNRQDNAAVGESTQFSMLQKPKPEEKSAENQAVAE

Nucleotide

• Length: 1197 bp

>NTDB_id=610517 LDO52_RS06820 WP_225554142.1 1398075..1399271(+) (pilU) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGTTTGCAACAGAGCTCTTAGAAGAAGCACGAAAATTCATGCACCACATGCTGACCAAAGTGGTCGAATATGGTGGTTC
AGATTTATTTATTACCGCCGACTTTCCACCGAGTATTAAACATCAGGGTTTAATGAAGCCTTTTGGACAGCAAGAACTGA
CGGCTGAAAAAACCAAGCTGTTTGCCTATAGTCTGATGAATGAAAAGCAGCGCAAGGAATTTGAAACGGAACTGGAGTGC
AACTTTGCTATCACTGTGCCGGGTGTTTCGCGTTTTCGGGTCAACGTGTTCCAGCAACAACTCAATGTTGGCATGGTGAT
TCGTACTATTACCGCAGAAATTCCAAATTTCCAGAAGCTCAAACTTCCTGATTCACTTAAACATGTGATTATGGAGAAAC
GTGGTCTGGTGCTGGTGGTCGGGGGAGCCGGCTCAGGAAAGTCAACCTCGCTCGCTGCGATGATTGACTACCGCAATGAA
AATTCAGCCGGGCATATTATTACCGTGGAAGATCCGGTGGAGTATGTACATAAACATAAAAAATCCATGATTACGCATCG
TGAAGTCGGCGTGGACTGTCATTCCTGGCACAATGCGCTGAAAAATACCTTGCGTCAGGCACCCGATGTGATTCTGATCG
GGGAAATTCGTGATACTGAAACCATGGAACATGCGATTGCTTTTGCCGAAACCGGGCATCTTTGTCTGGGAACTTTGCAG
TCCAACAATGCCAATCAGACTTTAGACCGGATTATTAACTTCTTCCCGGAAGAGCGCCGCAATCAGTTATTGATGGATTT
ATCCTCGAATATGAAGGCGATTATTTCCCAGCGTCTGATTCGGACGCAGGATGGTAAAGGCCGTCGTGCAGCGATTGAAA
TCATGTTAAATACGCCATTGATTTCCGACCTGATTTTGAAAGGTGAGTTTCATGAGCTGAAAGCGATTATGGCAAAATCC
CGTGAATTGGGGATGCAAACCTTTGACCAGGCCTTATTTGAATTGTATAACCAGGGCGAAATTTCTTATGAGGAAGCGTT
ACGCAATGCCGACTCCACCAATGAATTACGCTTACAGATCAAGCTAAAAAGTAATCGTCAGGATAATGCAGCAGTCGGAG
AAAGTACGCAGTTTTCTATGCTACAAAAACCAAAACCTGAAGAAAAATCAGCAGAAAATCAAGCTGTAGCTGAATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (119-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	61.494	87.437	0.538
pilU	Acinetobacter baylyi ADP1	55.331	87.186	0.482
pilU	Vibrio cholerae strain A1552	50.959	91.709	0.467