Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LDO71_RS15280 Genome accession   NZ_CP084297
Coordinates   3209938..3210348 (-) Length   136 a.a.
NCBI ID   WP_001978433.1    Uniprot ID   A0A0E1JQ57
Organism   Acinetobacter baumannii strain LHC22-2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3204938..3215348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS15250 (LDO71_15250) - 3205024..3205293 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  LDO71_RS15255 (LDO71_15255) rapZ 3205290..3206141 (-) 852 WP_000821671.1 RNase adapter RapZ -
  LDO71_RS15260 (LDO71_15260) panC 3206164..3207012 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LDO71_RS15265 (LDO71_15265) panB 3207016..3207825 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LDO71_RS15270 (LDO71_15270) folK 3207871..3208353 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LDO71_RS15275 (LDO71_15275) pcnB 3208350..3209813 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LDO71_RS15280 (LDO71_15280) comEA 3209938..3210348 (-) 411 WP_001978433.1 ComEA family DNA-binding protein Machinery gene
  LDO71_RS15285 (LDO71_15285) mazG 3210317..3211123 (-) 807 WP_225545872.1 nucleoside triphosphate pyrophosphohydrolase -
  LDO71_RS15290 (LDO71_15290) - 3211235..3212008 (+) 774 WP_225545873.1 SDR family oxidoreductase -
  LDO71_RS15295 (LDO71_15295) - 3212053..3214359 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15687.00 Da        Isoelectric Point: 10.4475

>NTDB_id=610478 LDO71_RS15280 WP_001978433.1 3209938..3210348(-) (comEA) [Acinetobacter baumannii strain LHC22-2]
MQYSMRFWKNKYFLLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=610478 LDO71_RS15280 WP_001978433.1 3209938..3210348(-) (comEA) [Acinetobacter baumannii strain LHC22-2]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1JQ57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412