Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDX55_RS00055 Genome accession   NZ_CP084249
Coordinates   13102..13599 (+) Length   165 a.a.
NCBI ID   WP_034533769.1    Uniprot ID   -
Organism   Apilactobacillus kunkeei strain IBH001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8102..18599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDX55_RS00040 (LDX55_00040) - 10113..11402 (+) 1290 WP_301637661.1 MFS transporter -
  LDX55_RS00045 (LDX55_00045) - 11495..12583 (+) 1089 WP_140999903.1 hypothetical protein -
  LDX55_RS00050 (LDX55_00050) rpsF 12767..13057 (+) 291 WP_034533768.1 30S ribosomal protein S6 -
  LDX55_RS00055 (LDX55_00055) ssb 13102..13599 (+) 498 WP_034533769.1 single-stranded DNA-binding protein Machinery gene
  LDX55_RS00060 (LDX55_00060) rpsR 13628..13864 (+) 237 WP_034530639.1 30S ribosomal protein S18 -
  LDX55_RS00065 (LDX55_00065) - 14028..16064 (+) 2037 WP_080695498.1 DHH family phosphoesterase -
  LDX55_RS00070 (LDX55_00070) rplI 16132..16584 (+) 453 WP_034530642.1 50S ribosomal protein L9 -
  LDX55_RS00075 (LDX55_00075) dnaB 16609..17994 (+) 1386 WP_140999902.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17987.33 Da        Isoelectric Point: 4.4398

>NTDB_id=610314 LDX55_RS00055 WP_034533769.1 13102..13599(+) (ssb) [Apilactobacillus kunkeei strain IBH001]
MINRTTLTGRLTRDVDLRYTPSGSAVGNFTLAVDRSFTNQQGEREADFINCVIWRKSAENFANFTHKGALVGIDGRIQTR
NYENQQGQRVYVTEVVVENFALLEPRSSNQGNNNAGNNAPQANAGNNNPFDSSNNAPSNNGGNNSADPFANSGDQIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=610314 LDX55_RS00055 WP_034533769.1 13102..13599(+) (ssb) [Apilactobacillus kunkeei strain IBH001]
ATGATTAATCGTACAACTTTAACTGGTAGATTAACACGGGATGTTGATTTGCGATACACTCCAAGCGGTTCAGCCGTAGG
TAACTTCACTTTAGCTGTTGATCGTAGTTTTACTAACCAACAAGGTGAAAGAGAAGCAGATTTTATCAACTGTGTTATCT
GGCGTAAATCCGCTGAAAACTTTGCTAACTTCACCCATAAGGGTGCTTTGGTTGGTATTGATGGACGTATTCAAACAAGA
AATTACGAAAATCAACAAGGCCAAAGAGTATATGTTACTGAAGTAGTTGTAGAAAACTTTGCATTACTAGAACCTCGTTC
AAGTAACCAAGGTAACAACAACGCCGGCAACAATGCTCCTCAAGCAAATGCAGGAAATAATAATCCATTTGATTCATCAA
ACAATGCCCCATCAAATAATGGTGGCAACAACTCAGCGGATCCATTCGCTAACTCTGGTGATCAAATTGATATTTCCGAT
GATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.442

100

0.703
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.618
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.242

0.364