Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K9N64_RS04775 Genome accession   NZ_CP084248
Coordinates   500778..501290 (-) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus lactis strain DH9003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 495778..506290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N64_RS04755 (K9N64_04745) dnaB 496300..497667 (-) 1368 WP_002288373.1 replicative DNA helicase -
  K9N64_RS04760 (K9N64_04750) rplI 497942..498394 (-) 453 WP_002293132.1 50S ribosomal protein L9 -
  K9N64_RS04765 (K9N64_04755) - 498400..500373 (-) 1974 WP_002319563.1 DHH family phosphoesterase -
  K9N64_RS04770 (K9N64_04760) rpsR 500516..500752 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  K9N64_RS04775 (K9N64_04765) ssb 500778..501290 (-) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  K9N64_RS04780 (K9N64_04770) rpsF 501341..501640 (-) 300 WP_225479308.1 30S ribosomal protein S6 -
  K9N64_RS04785 (K9N64_04775) gyrA 501876..504347 (-) 2472 WP_002293127.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=610281 K9N64_RS04775 WP_002288368.1 500778..501290(-) (ssb) [Enterococcus lactis strain DH9003]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=610281 K9N64_RS04775 WP_002288368.1 500778..501290(-) (ssb) [Enterococcus lactis strain DH9003]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCCCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTAACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388