Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RES5_RS07595 Genome accession   NZ_CP084235
Coordinates   1538685..1539551 (-) Length   288 a.a.
NCBI ID   WP_037551650.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SE2.14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1523577..1570023 1538685..1539551 within 0


Gene organization within MGE regions


Location: 1523577..1570023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RES5_RS07530 (RES5_007530) rseP 1524432..1525718 (-) 1287 WP_161511120.1 RIP metalloprotease RseP -
  RES5_RS07535 (RES5_007535) - 1525929..1526711 (-) 783 WP_037537321.1 phosphatidate cytidylyltransferase -
  RES5_RS07540 (RES5_007540) - 1526715..1527485 (-) 771 WP_037551640.1 isoprenyl transferase -
  RES5_RS07545 (RES5_007545) frr 1527706..1528260 (-) 555 WP_011275941.1 ribosome recycling factor -
  RES5_RS07550 (RES5_007550) pyrH 1528278..1529000 (-) 723 WP_011275942.1 UMP kinase -
  RES5_RS07555 (RES5_007555) tsf 1529137..1530015 (-) 879 WP_011275943.1 translation elongation factor Ts -
  RES5_RS07560 (RES5_007560) rpsB 1530180..1530968 (-) 789 WP_011275944.1 30S ribosomal protein S2 -
  RES5_RS07565 (RES5_007565) codY 1531238..1532011 (-) 774 WP_037551646.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  RES5_RS07570 (RES5_007570) hslU 1532033..1533436 (-) 1404 WP_037537323.1 ATP-dependent protease ATPase subunit HslU -
  RES5_RS07575 (RES5_007575) hslV 1533495..1534040 (-) 546 WP_011275947.1 ATP-dependent protease subunit HslV -
  RES5_RS07580 (RES5_007580) xerC 1534041..1534904 (-) 864 WP_276311470.1 tyrosine recombinase XerC -
  RES5_RS07585 (RES5_007585) trmFO 1535106..1536413 (-) 1308 WP_037537326.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RES5_RS07590 (RES5_007590) topA 1536437..1538506 (-) 2070 WP_037537327.1 type I DNA topoisomerase -
  RES5_RS07595 (RES5_007595) dprA 1538685..1539551 (-) 867 WP_037551650.1 DNA-processing protein DprA Machinery gene
  RES5_RS07600 (RES5_007600) - 1539770..1540718 (-) 949 Protein_1475 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  RES5_RS07605 (RES5_007605) - 1540749..1540992 (-) 244 Protein_1476 cell wall hydrolase -
  RES5_RS07610 (RES5_007610) sucD 1541441..1542346 (-) 906 WP_037551652.1 succinate--CoA ligase subunit alpha -
  RES5_RS07615 (RES5_007615) sucC 1542368..1543534 (-) 1167 WP_053024898.1 ADP-forming succinate--CoA ligase subunit beta -
  RES5_RS07620 (RES5_007620) - 1543646..1544413 (-) 768 WP_161510896.1 ribonuclease HII -
  RES5_RS07625 (RES5_007625) ylqF 1544397..1545281 (-) 885 WP_070442290.1 ribosome biogenesis GTPase YlqF -
  RES5_RS07630 (RES5_007630) - 1545519..1548113 (+) 2595 WP_037551660.1 YfhO family protein -
  RES5_RS07635 (RES5_007635) - 1548115..1550724 (+) 2610 WP_161510897.1 YfhO family protein -
  RES5_RS07640 (RES5_007640) rplS 1550875..1551225 (-) 351 WP_037537864.1 50S ribosomal protein L19 -
  RES5_RS07645 (RES5_007645) trmD 1551330..1552067 (-) 738 WP_037551666.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RES5_RS07650 (RES5_007650) rimM 1552067..1552570 (-) 504 WP_161510898.1 ribosome maturation factor RimM -
  RES5_RS07655 (RES5_007655) rpsP 1552689..1552964 (-) 276 WP_011275962.1 30S ribosomal protein S16 -
  RES5_RS07660 (RES5_007660) ffh 1553479..1554849 (-) 1371 WP_161510899.1 signal recognition particle protein -
  RES5_RS07665 (RES5_007665) - 1554875..1555207 (-) 333 WP_011275964.1 putative DNA-binding protein -
  RES5_RS07670 (RES5_007670) ftsY 1555194..1556417 (-) 1224 WP_053024892.1 signal recognition particle-docking protein FtsY -
  RES5_RS07675 (RES5_007675) smc 1556414..1559983 (-) 3570 WP_053024891.1 chromosome segregation protein SMC -
  RES5_RS07680 (RES5_007680) rnc 1560068..1560820 (-) 753 WP_276312364.1 ribonuclease III -
  RES5_RS07685 (RES5_007685) - 1560891..1561124 (-) 234 WP_001830184.1 acyl carrier protein -
  RES5_RS07690 (RES5_007690) fabG 1561237..1561974 (-) 738 WP_011275968.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  RES5_RS07695 (RES5_007695) fabD 1561964..1562893 (-) 930 WP_053026806.1 ACP S-malonyltransferase -
  RES5_RS07700 (RES5_007700) plsX 1562886..1563872 (-) 987 WP_037551683.1 phosphate acyltransferase PlsX -
  RES5_RS07705 (RES5_007705) fapR 1563874..1564434 (-) 561 WP_037551685.1 transcription factor FapR -
  RES5_RS07710 (RES5_007710) recG 1564570..1566621 (-) 2052 WP_037551688.1 ATP-dependent DNA helicase RecG -
  RES5_RS07715 (RES5_007715) - 1566776..1567573 (-) 798 WP_161510900.1 thermonuclease family protein -
  RES5_RS07720 (RES5_007720) - 1567744..1569047 (-) 1304 Protein_1499 ISL3 family transposase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33107.08 Da        Isoelectric Point: 9.2746

>NTDB_id=610239 RES5_RS07595 WP_037551650.1 1538685..1539551(-) (dprA) [Staphylococcus haemolyticus strain SE2.14]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPDFFKFSYTDQIDTIRNWDRMFHNDDFIDKFNNLNEKDILSLLQNHKVSFTT
PFNTNYPRLLKEIYDYPFVLFYQGDPRLLTSSNTLGVVGSRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEEKGLVISEYPPLTSVRRYHFPQRNRLISGLSKGVLITEASVRSGSQIT
IDCALDQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=610239 RES5_RS07595 WP_037551650.1 1538685..1539551(-) (dprA) [Staphylococcus haemolyticus strain SE2.14]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGCTAGGTTATACGACCCAACATATTCATCATTTATTAAAATT
AAATCCTGATTTTTTTAAATTCTCTTATACTGATCAAATAGATACAATAAGAAATTGGGACAGAATGTTTCATAATGATG
ATTTTATTGATAAATTTAATAATTTAAATGAAAAAGATATTTTGTCACTTTTGCAGAATCACAAAGTAAGTTTTACAACA
CCGTTTAACACTAATTATCCTCGACTGTTAAAAGAAATTTATGATTATCCGTTTGTCCTATTTTACCAAGGTGACCCCCG
TTTATTAACATCCTCCAATACATTAGGTGTGGTGGGCTCAAGAAATGCAACAGAATACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACTATTATTTCCGGTTTGGCAAAAGGTGCTGATAGCATAGCACATCATTTT
GCTATAGAGTATCAATTACCTACAATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGAAAAAGGTTTAGTTATTAGTGAATATCCGCCACTCACTAGTGTTAGGCGATATCACTTTCCGC
AGCGCAATCGTTTGATAAGCGGTCTTTCAAAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGCGCATTAGACCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACAAAAGGTAATTT
GAAACGAGCTCAAGAAGGTGCGATGATTGTAACCTCAGCTGATGATATCCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.281

98.958

0.517
  dprA Staphylococcus aureus N315

52.281

98.958

0.517
  dprA Glaesserella parasuis strain SC1401

36.749

98.264

0.361