Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RES6_RS11220 Genome accession   NZ_CP084229
Coordinates   2281054..2281566 (-) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus strain SE3.8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2276054..2286566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RES6_RS11185 (RES6_011185) - 2276242..2276871 (-) 630 WP_053025259.1 LysE family translocator -
  RES6_RS11190 (RES6_011190) - 2277330..2277563 (+) 234 WP_053026827.1 hypothetical protein -
  RES6_RS11195 (RES6_011195) - 2277621..2277869 (-) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  RES6_RS11200 (RES6_011200) - 2278047..2278796 (-) 750 WP_161511168.1 amidohydrolase -
  RES6_RS11205 (RES6_011205) - 2279009..2279266 (+) 258 WP_161511169.1 XRE family transcriptional regulator -
  RES6_RS11210 (RES6_011210) - 2279470..2280546 (+) 1077 WP_161511170.1 Ltp family lipoprotein -
  RES6_RS11215 (RES6_011215) rpsR 2280764..2281006 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  RES6_RS11220 (RES6_011220) ssbA 2281054..2281566 (-) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene
  RES6_RS11225 (RES6_011225) rpsF 2281588..2281884 (-) 297 WP_011276867.1 30S ribosomal protein S6 -
  RES6_RS11230 (RES6_011230) - 2282175..2282981 (+) 807 WP_161511171.1 glycoside hydrolase family 25 protein -
  RES6_RS11235 (RES6_011235) - 2283047..2283238 (+) 192 WP_011276869.1 hypothetical protein -
  RES6_RS11240 (RES6_011240) ychF 2283380..2284477 (-) 1098 WP_053019363.1 redox-regulated ATPase YchF -
  RES6_RS11245 (RES6_011245) - 2284489..2284692 (-) 204 WP_011276871.1 DUF951 domain-containing protein -
  RES6_RS11250 (RES6_011250) - 2284714..2285595 (-) 882 WP_011276872.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=610213 RES6_RS11220 WP_011276866.1 2281054..2281566(-) (ssbA) [Staphylococcus haemolyticus strain SE3.8]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=610213 RES6_RS11220 WP_011276866.1 2281054..2281566(-) (ssbA) [Staphylococcus haemolyticus strain SE3.8]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACGTCTTACAATAATAATAATTCATCAAATAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YXI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376