Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RES6_RS07585 Genome accession   NZ_CP084229
Coordinates   1538726..1539592 (-) Length   288 a.a.
NCBI ID   WP_037551650.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SE3.8     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1523618..1570064 1538726..1539592 within 0


Gene organization within MGE regions


Location: 1523618..1570064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RES6_RS07520 (RES6_007520) rseP 1524473..1525759 (-) 1287 WP_161511120.1 RIP metalloprotease RseP -
  RES6_RS07525 (RES6_007525) - 1525970..1526752 (-) 783 WP_037537321.1 phosphatidate cytidylyltransferase -
  RES6_RS07530 (RES6_007530) - 1526756..1527526 (-) 771 WP_037551640.1 isoprenyl transferase -
  RES6_RS07535 (RES6_007535) frr 1527747..1528301 (-) 555 WP_011275941.1 ribosome recycling factor -
  RES6_RS07540 (RES6_007540) pyrH 1528319..1529041 (-) 723 WP_011275942.1 UMP kinase -
  RES6_RS07545 (RES6_007545) tsf 1529178..1530056 (-) 879 WP_011275943.1 translation elongation factor Ts -
  RES6_RS07550 (RES6_007550) rpsB 1530221..1531009 (-) 789 WP_011275944.1 30S ribosomal protein S2 -
  RES6_RS07555 (RES6_007555) codY 1531279..1532052 (-) 774 WP_037551646.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  RES6_RS07560 (RES6_007560) hslU 1532074..1533477 (-) 1404 WP_037537323.1 ATP-dependent protease ATPase subunit HslU -
  RES6_RS07565 (RES6_007565) hslV 1533536..1534081 (-) 546 WP_011275947.1 ATP-dependent protease subunit HslV -
  RES6_RS07570 (RES6_007570) xerC 1534082..1534945 (-) 864 WP_276311470.1 tyrosine recombinase XerC -
  RES6_RS07575 (RES6_007575) trmFO 1535147..1536454 (-) 1308 WP_037537326.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RES6_RS07580 (RES6_007580) topA 1536478..1538547 (-) 2070 WP_037537327.1 type I DNA topoisomerase -
  RES6_RS07585 (RES6_007585) dprA 1538726..1539592 (-) 867 WP_037551650.1 DNA-processing protein DprA Machinery gene
  RES6_RS07590 (RES6_007590) - 1539811..1540759 (-) 949 Protein_1470 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  RES6_RS07595 (RES6_007595) - 1540790..1541033 (-) 244 Protein_1471 cell wall hydrolase -
  RES6_RS07600 (RES6_007600) sucD 1541482..1542387 (-) 906 WP_037551652.1 succinate--CoA ligase subunit alpha -
  RES6_RS07605 (RES6_007605) sucC 1542409..1543575 (-) 1167 WP_053024898.1 ADP-forming succinate--CoA ligase subunit beta -
  RES6_RS07610 (RES6_007610) - 1543687..1544454 (-) 768 WP_161510896.1 ribonuclease HII -
  RES6_RS07615 (RES6_007615) ylqF 1544438..1545322 (-) 885 WP_070442290.1 ribosome biogenesis GTPase YlqF -
  RES6_RS07620 (RES6_007620) - 1545560..1548154 (+) 2595 WP_037551660.1 YfhO family protein -
  RES6_RS07625 (RES6_007625) - 1548156..1550765 (+) 2610 WP_161510897.1 YfhO family protein -
  RES6_RS07630 (RES6_007630) rplS 1550916..1551266 (-) 351 WP_037537864.1 50S ribosomal protein L19 -
  RES6_RS07635 (RES6_007635) trmD 1551371..1552108 (-) 738 WP_037551666.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RES6_RS07640 (RES6_007640) rimM 1552108..1552611 (-) 504 WP_161510898.1 ribosome maturation factor RimM -
  RES6_RS07645 (RES6_007645) rpsP 1552730..1553005 (-) 276 WP_011275962.1 30S ribosomal protein S16 -
  RES6_RS07650 (RES6_007650) ffh 1553520..1554890 (-) 1371 WP_161510899.1 signal recognition particle protein -
  RES6_RS07655 (RES6_007655) - 1554916..1555248 (-) 333 WP_011275964.1 putative DNA-binding protein -
  RES6_RS07660 (RES6_007660) ftsY 1555235..1556458 (-) 1224 WP_053024892.1 signal recognition particle-docking protein FtsY -
  RES6_RS07665 (RES6_007665) smc 1556455..1560024 (-) 3570 WP_053024891.1 chromosome segregation protein SMC -
  RES6_RS07670 (RES6_007670) rnc 1560109..1560861 (-) 753 WP_276312364.1 ribonuclease III -
  RES6_RS07675 (RES6_007675) - 1560932..1561165 (-) 234 WP_001830184.1 acyl carrier protein -
  RES6_RS07680 (RES6_007680) fabG 1561278..1562015 (-) 738 WP_011275968.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  RES6_RS07685 (RES6_007685) fabD 1562005..1562934 (-) 930 WP_053026806.1 ACP S-malonyltransferase -
  RES6_RS07690 (RES6_007690) plsX 1562927..1563913 (-) 987 WP_037551683.1 phosphate acyltransferase PlsX -
  RES6_RS07695 (RES6_007695) fapR 1563915..1564475 (-) 561 WP_037551685.1 transcription factor FapR -
  RES6_RS07700 (RES6_007700) recG 1564611..1566662 (-) 2052 WP_037551688.1 ATP-dependent DNA helicase RecG -
  RES6_RS07705 (RES6_007705) - 1566817..1567614 (-) 798 WP_161510900.1 thermonuclease family protein -
  RES6_RS07710 (RES6_007710) - 1567785..1569088 (-) 1304 Protein_1494 ISL3 family transposase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33107.08 Da        Isoelectric Point: 9.2746

>NTDB_id=610206 RES6_RS07585 WP_037551650.1 1538726..1539592(-) (dprA) [Staphylococcus haemolyticus strain SE3.8]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPDFFKFSYTDQIDTIRNWDRMFHNDDFIDKFNNLNEKDILSLLQNHKVSFTT
PFNTNYPRLLKEIYDYPFVLFYQGDPRLLTSSNTLGVVGSRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEEKGLVISEYPPLTSVRRYHFPQRNRLISGLSKGVLITEASVRSGSQIT
IDCALDQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=610206 RES6_RS07585 WP_037551650.1 1538726..1539592(-) (dprA) [Staphylococcus haemolyticus strain SE3.8]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGCTAGGTTATACGACCCAACATATTCATCATTTATTAAAATT
AAATCCTGATTTTTTTAAATTCTCTTATACTGATCAAATAGATACAATAAGAAATTGGGACAGAATGTTTCATAATGATG
ATTTTATTGATAAATTTAATAATTTAAATGAAAAAGATATTTTGTCACTTTTGCAGAATCACAAAGTAAGTTTTACAACA
CCGTTTAACACTAATTATCCTCGACTGTTAAAAGAAATTTATGATTATCCGTTTGTCCTATTTTACCAAGGTGACCCCCG
TTTATTAACATCCTCCAATACATTAGGTGTGGTGGGCTCAAGAAATGCAACAGAATACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACTATTATTTCCGGTTTGGCAAAAGGTGCTGATAGCATAGCACATCATTTT
GCTATAGAGTATCAATTACCTACAATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGAAAAAGGTTTAGTTATTAGTGAATATCCGCCACTCACTAGTGTTAGGCGATATCACTTTCCGC
AGCGCAATCGTTTGATAAGCGGTCTTTCAAAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGCGCATTAGACCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACAAAAGGTAATTT
GAAACGAGCTCAAGAAGGTGCGATGATTGTAACCTCAGCTGATGATATCCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.281

98.958

0.517
  dprA Staphylococcus aureus N315

52.281

98.958

0.517
  dprA Glaesserella parasuis strain SC1401

36.749

98.264

0.361