Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   NMK58_RS26000 Genome accession   NZ_CP101292
Coordinates   5029483..5030142 (+) Length   219 a.a.
NCBI ID   WP_001221502.1    Uniprot ID   B7LGG8
Organism   Escherichia coli strain 2003-3014     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 5024483..5035142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK58_RS25980 (NMK58_25980) plsC 5024630..5025367 (-) 738 WP_000965712.1 1-acylglycerol-3-phosphate O-acyltransferase -
  NMK58_RS25985 (NMK58_25985) parC 5025600..5027858 (-) 2259 WP_001281899.1 DNA topoisomerase IV subunit A -
  NMK58_RS25990 (NMK58_25990) ygiV 5028404..5028886 (-) 483 WP_024017596.1 GyrI-like domain-containing protein -
  NMK58_RS25995 (NMK58_25995) ygiW 5028939..5029331 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  NMK58_RS26000 (NMK58_26000) ciaR 5029483..5030142 (+) 660 WP_001221502.1 quorum sensing response regulator transcription factor QseB Regulator
  NMK58_RS26005 (NMK58_26005) qseC 5030139..5031488 (+) 1350 WP_000673354.1 quorum sensing histidine kinase QseC -
  NMK58_RS26010 (NMK58_26010) ygiZ 5031534..5031866 (-) 333 WP_000912120.1 DUF2645 family protein -
  NMK58_RS26015 (NMK58_26015) mdaB 5032185..5032766 (+) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  NMK58_RS26020 (NMK58_26020) ygiN 5032797..5033111 (+) 315 WP_000958598.1 putative quinol monooxygenase -
  NMK58_RS26025 (NMK58_26025) parE 5033159..5035051 (-) 1893 WP_000195296.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24745.66 Da        Isoelectric Point: 6.6543

>NTDB_id=610140 NMK58_RS26000 WP_001221502.1 5029483..5030142(+) (ciaR) [Escherichia coli strain 2003-3014]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=610140 NMK58_RS26000 WP_001221502.1 5029483..5030142(+) (ciaR) [Escherichia coli strain 2003-3014]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGAGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LGG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365