Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RBAU_RS17290 Genome accession   NC_022075
Coordinates   3534827..3536212 (-) Length   461 a.a.
NCBI ID   WP_007407482.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5033     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3529827..3541212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAU_RS17255 (RBAU_3394) flgL 3530002..3530919 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  RBAU_RS17260 (RBAU_3395) flgK 3530931..3532448 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  RBAU_RS17265 (RBAU_3396) - 3532464..3532946 (-) 483 WP_003151394.1 flagellar protein FlgN -
  RBAU_RS17270 (RBAU_3397) flgM 3532961..3533227 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  RBAU_RS17275 (RBAU_3398) - 3533297..3533716 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  RBAU_RS17280 (RBAU_3399) comFC 3533790..3534479 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  RBAU_RS17285 (RBAU_3400) - 3534485..3534769 (-) 285 WP_007407481.1 competence protein ComFB -
  RBAU_RS17290 (RBAU_3401) comFA 3534827..3536212 (-) 1386 WP_007407482.1 DEAD/DEAH box helicase Machinery gene
  RBAU_RS17295 (RBAU_3402) - 3536321..3537169 (-) 849 WP_007407483.1 DegV family protein -
  RBAU_RS17300 (RBAU_3403) degU 3537267..3537956 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RBAU_RS17305 (RBAU_3404) degS 3538033..3539196 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  RBAU_RS17310 (RBAU_3405) - 3539419..3540066 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52635.04 Da        Isoelectric Point: 10.2284

>NTDB_id=61013 RBAU_RS17290 WP_007407482.1 3534827..3536212(-) (comFA) [Bacillus velezensis UCMB5033]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=61013 RBAU_RS17290 WP_007407482.1 3534827..3536212(-) (comFA) [Bacillus velezensis UCMB5033]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACCCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment