Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RBAU_RS17280 Genome accession   NC_022075
Coordinates   3533790..3534479 (-) Length   229 a.a.
NCBI ID   WP_197061611.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5033     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3528790..3539479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAU_RS17245 (RBAU_3392) fliW 3528881..3529312 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  RBAU_RS17250 (RBAU_3393) - 3529342..3529911 (-) 570 WP_007407476.1 DUF6470 family protein -
  RBAU_RS17255 (RBAU_3394) flgL 3530002..3530919 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  RBAU_RS17260 (RBAU_3395) flgK 3530931..3532448 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  RBAU_RS17265 (RBAU_3396) - 3532464..3532946 (-) 483 WP_003151394.1 flagellar protein FlgN -
  RBAU_RS17270 (RBAU_3397) flgM 3532961..3533227 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  RBAU_RS17275 (RBAU_3398) - 3533297..3533716 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  RBAU_RS17280 (RBAU_3399) comFC 3533790..3534479 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  RBAU_RS17285 (RBAU_3400) - 3534485..3534769 (-) 285 WP_007407481.1 competence protein ComFB -
  RBAU_RS17290 (RBAU_3401) comFA 3534827..3536212 (-) 1386 WP_007407482.1 DEAD/DEAH box helicase Machinery gene
  RBAU_RS17295 (RBAU_3402) - 3536321..3537169 (-) 849 WP_007407483.1 DegV family protein -
  RBAU_RS17300 (RBAU_3403) degU 3537267..3537956 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RBAU_RS17305 (RBAU_3404) degS 3538033..3539196 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25229.83 Da        Isoelectric Point: 8.0779

>NTDB_id=61012 RBAU_RS17280 WP_197061611.1 3533790..3534479(-) (comFC) [Bacillus velezensis UCMB5033]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=61012 RBAU_RS17280 WP_197061611.1 3533790..3534479(-) (comFC) [Bacillus velezensis UCMB5033]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment