Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LCH33_RS03350 Genome accession   NZ_CP084212
Coordinates   768723..770060 (-) Length   445 a.a.
NCBI ID   WP_057404220.1    Uniprot ID   A0AB34UBY2
Organism   Pseudomonas amygdali strain 35-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 763723..775060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH33_RS03340 (LCH33_000664) - 765631..766740 (-) 1110 WP_005777802.1 efflux RND transporter periplasmic adaptor subunit -
  LCH33_RS03345 (LCH33_000665) - 766822..767439 (-) 618 WP_005777803.1 TetR/AcrR family transcriptional regulator -
  LCH33_RS03350 (LCH33_000666) pilR 768723..770060 (-) 1338 WP_057404220.1 sigma-54 dependent transcriptional regulator Regulator
  LCH33_RS03355 (LCH33_000667) pilS 770063..771655 (-) 1593 WP_005777807.1 PAS domain-containing sensor histidine kinase Regulator
  LCH33_RS03360 (LCH33_000668) - 771645..771884 (-) 240 WP_002551997.1 PP0621 family protein -
  LCH33_RS03365 (LCH33_000669) - 772014..773036 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  LCH33_RS03370 (LCH33_000670) rluD 773186..774148 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LCH33_RS03375 (LCH33_000671) pgeF 774145..774873 (+) 729 WP_057404221.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49815.96 Da        Isoelectric Point: 6.8766

>NTDB_id=610105 LCH33_RS03350 WP_057404220.1 768723..770060(-) (pilR) [Pseudomonas amygdali strain 35-1]
MSQRQKILIVDDEPDIRKLLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LRRLAGNGTQPVARLNAQALDTLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEPNSPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=610105 LCH33_RS03350 WP_057404220.1 768723..770060(-) (pilR) [Pseudomonas amygdali strain 35-1]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCAAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGCAATGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAATGGCCTTGAGCTGGTGCAGCATATTCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATTAATGCGCTCAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
TGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAT
ATCAGTGGCGAATCGGGCAGTGGCAAGGAGCTTGTTGCGCGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAGAGTGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCACATACCGGGACGCTGTTTCTCGACGAGGTGGCCGACCTACCA
CTGGCCATGCAGGTAAAGCTGTTGCGAGCCATCCAGGAAAAATCAATCCGCAGTGTAGGCAGCCAGCAAGAGCAGATTGT
GGACGTACGCATTCTGTGCGCCACGCACAAGAACCTGAACGCAGAGGTAGCGGCAGGTCGCTTCCGCCAGGATCTGTATT
ACCGGTTGAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAGAGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTAAGGCGACTTGCTGGCAATGGCACGCAACCGGTGGCGCGCCTGAATGCGCAGGCGCTGGACACGCTGAAGAGCTACCG
ATTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATTCATGCCA
GCGACCTGCGCCTTGCAGAGTCCGCCAGCCCCCAGGAGCCCAACAGCCCTAGCCTGGCCGACATCGACAACCTTGAAGAT
TACCTGGAGAGCATCGAGCGCAAGCTGATTCTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCAGCGGCAGAAAG
GCTCAGCTTGTCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.252

99.775

0.771
  pilR Acinetobacter baumannii strain A118

48.596

100

0.506
  luxO Vibrio cholerae strain A1552

37.162

99.775

0.371