NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	NMT99_RS14135	Genome accession	NZ_CP101290
Coordinates	2708760..2709365 (-)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis strain LjM2
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2703760..2714365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMT99_RS14105	-	2704573..2704962 (+)	390	WP_029727131.1	TIGR04086 family membrane protein	-
NMT99_RS14110	yajC	2705019..2705285 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
NMT99_RS14115	tgt	2705322..2706467 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
NMT99_RS14120	queA	2706494..2707522 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
NMT99_RS14125	yrzS	2707552..2707752 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
NMT99_RS14130	ruvB	2707745..2708749 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
NMT99_RS14135	ruvA	2708760..2709365 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
NMT99_RS14140	bofC	2709504..2710016 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
NMT99_RS14145	csbX	2710064..2711371 (-)	1308	WP_003246197.1	MFS transporter	-
NMT99_RS14150	iolG	2711442..2712467 (-)	1026	WP_029318179.1	inositol 2-dehydrogenase	-
NMT99_RS14155	yrzF	2712705..2713352 (+)	648	WP_003246159.1	phosphotransferase	-
NMT99_RS14160	-	2713398..2713520 (-)	123	WP_003229707.1	hypothetical protein	-
NMT99_RS14170	-	2713683..2714051 (+)	369	WP_224912982.1	DUF5412 family protein	-
NMT99_RS14175	-	2714058..2714198 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=610037 NMT99_RS14135 WP_003229717.1 2708760..2709365(-) (ruvA) [Bacillus subtilis strain LjM2]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=610037 NMT99_RS14135 WP_003229717.1 2708760..2709365(-) (ruvA) [Bacillus subtilis strain LjM2]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCAGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0610037