Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDO72_RS18220 Genome accession   NZ_CP084197
Coordinates   3883392..3883955 (-) Length   187 a.a.
NCBI ID   WP_010252180.1    Uniprot ID   -
Organism   Pantoea agglomerans strain CB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3878392..3888955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO72_RS18200 (LDO72_18215) - 3879496..3879891 (+) 396 WP_003855733.1 transposase -
  LDO72_RS18205 (LDO72_18220) - 3880815..3881774 (-) 960 WP_191939160.1 DMT family transporter -
  LDO72_RS18210 (LDO72_18225) - 3881852..3882679 (-) 828 WP_031591778.1 AraC family transcriptional regulator -
  LDO72_RS18215 (LDO72_18230) - 3882800..3883321 (+) 522 WP_191939161.1 isochorismatase family protein -
  LDO72_RS18220 (LDO72_18235) ssb 3883392..3883955 (-) 564 WP_010252180.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LDO72_RS18225 (LDO72_18240) uvrA 3884180..3887008 (+) 2829 WP_031591782.1 excinuclease ABC subunit UvrA -
  LDO72_RS18230 (LDO72_18245) - 3887242..3888306 (+) 1065 WP_010252184.1 NAD(P)-dependent alcohol dehydrogenase -
  LDO72_RS18235 (LDO72_18250) - 3888359..3888682 (-) 324 WP_031591784.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19908.83 Da        Isoelectric Point: 5.2456

>NTDB_id=610017 LDO72_RS18220 WP_010252180.1 3883392..3883955(-) (ssb) [Pantoea agglomerans strain CB1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAGAGAPAGGGAQGGGNNNGWGQPQQPQGNNNQFSGGAQS
RPQPQPQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=610017 LDO72_RS18220 WP_010252180.1 3883392..3883955(-) (ssb) [Pantoea agglomerans strain CB1]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTATATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGACAAGCAGACCGGTGAAAACAAAGAGATCACTG
AGTGGCACCGTGTGGTGCTGTTTGGCAAACTGGCTGAAGTCGCGGGTGAATACCTGAAAAAAGGGTCGCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCGTTACACCACAGAAGTCGTGGTTAACGTTGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGCAGGGCGGTAACGCCGGTGCAGGCGCTCCAGCCGGTGGCGGCGCGCAGG
GCGGTGGCAACAACAATGGCTGGGGTCAGCCGCAGCAGCCGCAGGGCAACAATAACCAGTTCAGTGGCGGCGCGCAGTCC
CGTCCGCAGCCGCAGCCACAGAGCGCGCCGGCCAGCAACAACAACGAACCACCAATGGATTTCGACGACGATATTCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.229

100

0.701
  ssb Glaesserella parasuis strain SC1401

56.021

100

0.572
  ssb Neisseria gonorrhoeae MS11

46.354

100

0.476
  ssb Neisseria meningitidis MC58

46.561

100

0.471