Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LDO72_RS16805 Genome accession   NZ_CP084197
Coordinates   3562770..3564152 (-) Length   460 a.a.
NCBI ID   WP_031593287.1    Uniprot ID   -
Organism   Pantoea agglomerans strain CB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3557770..3569152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO72_RS16785 (LDO72_16795) - 3558815..3559192 (-) 378 WP_010253618.1 hypothetical protein -
  LDO72_RS16790 (LDO72_16800) - 3559305..3560201 (-) 897 WP_010253616.1 LysR family transcriptional regulator -
  LDO72_RS16795 (LDO72_16805) - 3560406..3561407 (+) 1002 WP_275102528.1 zinc-binding alcohol dehydrogenase family protein -
  LDO72_RS16800 (LDO72_16810) nadR 3561453..3562694 (-) 1242 WP_275102529.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  LDO72_RS16805 (LDO72_16815) radA 3562770..3564152 (-) 1383 WP_031593287.1 DNA repair protein RadA Machinery gene
  LDO72_RS16810 (LDO72_16820) serB 3564166..3565143 (-) 978 WP_039386412.1 phosphoserine phosphatase -
  LDO72_RS16815 (LDO72_16825) - 3565251..3565901 (+) 651 WP_010253606.1 YtjB family periplasmic protein -
  LDO72_RS16820 (LDO72_16830) yjjG 3566569..3567249 (-) 681 WP_010671712.1 pyrimidine 5'-nucleotidase -
  LDO72_RS16825 (LDO72_16835) rimI 3567268..3567708 (-) 441 WP_143991251.1 ribosomal protein S18-alanine N-acetyltransferase -
  LDO72_RS16830 (LDO72_16840) - 3567680..3568090 (-) 411 WP_143991252.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49307.93 Da        Isoelectric Point: 7.4220

>NTDB_id=610016 LDO72_RS16805 WP_031593287.1 3562770..3564152(-) (radA) [Pantoea agglomerans strain CB1]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEVTSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=610016 LDO72_RS16805 WP_031593287.1 3562770..3564152(-) (radA) [Pantoea agglomerans strain CB1]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGCT
ATGCCGGCAGCGCCGGAACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGTTTAGAGGCGTTACCGCGCTTCTCTACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TACAACAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCATCGCCGGGTAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGTGTGG
CGATCATCATGGTCGGTCACGTCACCAAAGATGGCTCCCTGGCCGGACCGAAAGTGCTGGAGCACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTTAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGG
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAAGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCACGCCGCGTGGCGGTAGGTCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCGGTGCTGCACCG
GCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTTAACGTGGTCGGCGGCGTCAAAGTCACTGAAACCAGTGCTG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCTAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTACCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

AAA domain (AAA_25)

(87-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424