Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   H8R35_RS05525 Genome accession   NZ_CP084085
Coordinates   1045978..1047159 (+) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain MS2167     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1040978..1052159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R35_RS05500 ctsR 1041539..1041850 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H8R35_RS05505 (H8R35_000916) ctsD 1041828..1043240 (+) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H8R35_RS05510 (H8R35_000917) ctsP 1043233..1043841 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H8R35_RS05515 (H8R35_000918) ctsX 1043845..1044432 (+) 588 WP_002851370.1 membrane protein Machinery gene
  H8R35_RS05520 (H8R35_000919) ctsE 1044422..1045981 (+) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  H8R35_RS05525 (H8R35_000920) ctsF 1045978..1047159 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  H8R35_RS05530 (H8R35_000921) - 1047152..1047916 (-) 765 WP_002855821.1 TSUP family transporter -
  H8R35_RS05535 (H8R35_000922) - 1047920..1048684 (-) 765 WP_002851318.1 TIGR02757 family protein -
  H8R35_RS05540 (H8R35_000923) flgK 1048701..1050527 (-) 1827 WP_002876047.1 flagellar hook-associated protein FlgK -
  H8R35_RS05545 (H8R35_000924) - 1050537..1050971 (-) 435 WP_002876049.1 flagellar protein FlgN -
  H8R35_RS05550 (H8R35_000925) flgM 1051014..1051211 (-) 198 WP_002855362.1 flagellar biosynthesis anti-sigma factor FlgM -
  H8R35_RS05555 (H8R35_000926) - 1051274..1051615 (-) 342 WP_002851191.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=609478 H8R35_RS05525 WP_002868229.1 1045978..1047159(+) (ctsF) [Campylobacter jejuni strain MS2167]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=609478 H8R35_RS05525 WP_002868229.1 1045978..1047159(+) (ctsF) [Campylobacter jejuni strain MS2167]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987