Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   H8R35_RS05505 Genome accession   NZ_CP084085
Coordinates   1041828..1043240 (+) Length   470 a.a.
NCBI ID   WP_002871859.1    Uniprot ID   A0A3X8VKN9
Organism   Campylobacter jejuni strain MS2167     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036828..1048240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R35_RS05490 (H8R35_000914) - 1037222..1037863 (+) 642 WP_255020439.1 HAD family hydrolase -
  H8R35_RS05495 (H8R35_000915) nifJ 1037955..1041515 (+) 3561 WP_002867243.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H8R35_RS05500 ctsR 1041539..1041850 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H8R35_RS05505 (H8R35_000916) ctsD 1041828..1043240 (+) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H8R35_RS05510 (H8R35_000917) ctsP 1043233..1043841 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H8R35_RS05515 (H8R35_000918) ctsX 1043845..1044432 (+) 588 WP_002851370.1 membrane protein Machinery gene
  H8R35_RS05520 (H8R35_000919) ctsE 1044422..1045981 (+) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  H8R35_RS05525 (H8R35_000920) ctsF 1045978..1047159 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  H8R35_RS05530 (H8R35_000921) - 1047152..1047916 (-) 765 WP_002855821.1 TSUP family transporter -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53067.63 Da        Isoelectric Point: 6.6184

>NTDB_id=609474 H8R35_RS05505 WP_002871859.1 1041828..1043240(+) (ctsD) [Campylobacter jejuni strain MS2167]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=609474 H8R35_RS05505 WP_002871859.1 1041828..1043240(+) (ctsD) [Campylobacter jejuni strain MS2167]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGTATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACTGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8VKN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.787

100

0.998