Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   H8R36_RS08060 Genome accession   NZ_CP084084
Coordinates   1555952..1557133 (-) Length   393 a.a.
NCBI ID   WP_002910983.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2074     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550952..1562133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R36_RS08030 (H8R36_001359) - 1551497..1551838 (+) 342 WP_002855749.1 hypothetical protein -
  H8R36_RS08035 (H8R36_001360) flgM 1551901..1552098 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  H8R36_RS08040 (H8R36_001361) - 1552140..1552574 (+) 435 WP_002856482.1 flagellar protein FlgN -
  H8R36_RS08045 (H8R36_001362) flgK 1552584..1554410 (+) 1827 WP_002856644.1 flagellar hook-associated protein FlgK -
  H8R36_RS08050 - 1554427..1555191 (+) 765 WP_002890500.1 TIGR02757 family protein -
  H8R36_RS08055 (H8R36_001363) - 1555195..1555959 (+) 765 WP_002855821.1 TSUP family transporter -
  H8R36_RS08060 (H8R36_001364) ctsF 1555952..1557133 (-) 1182 WP_002910983.1 type II secretion system F family protein Machinery gene
  H8R36_RS08065 ctsE 1557130..1558688 (-) 1559 Protein_1560 GspE/PulE family protein -
  H8R36_RS08070 (H8R36_001366) ctsX 1558678..1559265 (-) 588 WP_002851370.1 membrane protein Machinery gene
  H8R36_RS08075 (H8R36_001367) ctsP 1559269..1559877 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H8R36_RS08080 (H8R36_001368) ctsD 1559870..1561282 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H8R36_RS08085 ctsR 1561260..1561571 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45804.46 Da        Isoelectric Point: 9.3898

>NTDB_id=609459 H8R36_RS08060 WP_002910983.1 1555952..1557133(-) (ctsF) [Campylobacter jejuni strain MS2074]
MKFYEVEFLKNNQNYTKTIKAENLNIAQTKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSRAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEHMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=609459 H8R36_RS08060 WP_002910983.1 1555952..1557133(-) (ctsF) [Campylobacter jejuni strain MS2074]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAACAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATAGCTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCGGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCATATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.449

99.746

0.972