Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   H8R36_RS08075 Genome accession   NZ_CP084084
Coordinates   1559269..1559877 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain MS2074     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1554269..1564877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R36_RS08050 - 1554427..1555191 (+) 765 WP_002890500.1 TIGR02757 family protein -
  H8R36_RS08055 (H8R36_001363) - 1555195..1555959 (+) 765 WP_002855821.1 TSUP family transporter -
  H8R36_RS08060 (H8R36_001364) ctsF 1555952..1557133 (-) 1182 WP_002910983.1 type II secretion system F family protein Machinery gene
  H8R36_RS08065 ctsE 1557130..1558688 (-) 1559 Protein_1560 GspE/PulE family protein -
  H8R36_RS08070 (H8R36_001366) ctsX 1558678..1559265 (-) 588 WP_002851370.1 membrane protein Machinery gene
  H8R36_RS08075 (H8R36_001367) ctsP 1559269..1559877 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H8R36_RS08080 (H8R36_001368) ctsD 1559870..1561282 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H8R36_RS08085 ctsR 1561260..1561571 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=609461 H8R36_RS08075 WP_002851464.1 1559269..1559877(-) (ctsP) [Campylobacter jejuni strain MS2074]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=609461 H8R36_RS08075 WP_002851464.1 1559269..1559877(-) (ctsP) [Campylobacter jejuni strain MS2074]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATTAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995