Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H8R36_RS08085 Genome accession   NZ_CP084084
Coordinates   1561260..1561571 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain MS2074     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1556260..1566571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R36_RS08065 ctsE 1557130..1558688 (-) 1559 Protein_1560 GspE/PulE family protein -
  H8R36_RS08070 (H8R36_001366) ctsX 1558678..1559265 (-) 588 WP_002851370.1 membrane protein Machinery gene
  H8R36_RS08075 (H8R36_001367) ctsP 1559269..1559877 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H8R36_RS08080 (H8R36_001368) ctsD 1559870..1561282 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H8R36_RS08085 ctsR 1561260..1561571 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  H8R36_RS08090 (H8R36_001369) nifJ 1561595..1565155 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H8R36_RS08095 (H8R36_001370) - 1565248..1565889 (-) 642 WP_002856102.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=609463 H8R36_RS08085 WP_002855438.1 1561260..1561571(-) (ctsR) [Campylobacter jejuni strain MS2074]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=609463 H8R36_RS08085 WP_002855438.1 1561260..1561571(-) (ctsR) [Campylobacter jejuni strain MS2074]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1