Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   H8R33_RS05910 Genome accession   NZ_CP084080
Coordinates   1109453..1110634 (+) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain MS2005     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1104453..1115634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS05885 ctsR 1105014..1105325 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H8R33_RS05890 (H8R33_000980) ctsD 1105303..1106715 (+) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H8R33_RS05895 (H8R33_000981) ctsP 1106708..1107316 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H8R33_RS05900 (H8R33_000982) ctsX 1107320..1107907 (+) 588 WP_002851370.1 membrane protein Machinery gene
  H8R33_RS05905 (H8R33_000983) ctsE 1107897..1109456 (+) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  H8R33_RS05910 (H8R33_000984) ctsF 1109453..1110634 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  H8R33_RS05915 (H8R33_000985) - 1110627..1111391 (-) 765 WP_002855821.1 TSUP family transporter -
  H8R33_RS05920 (H8R33_000986) - 1111395..1112159 (-) 765 WP_052786571.1 TIGR02757 family protein -
  H8R33_RS05925 (H8R33_000987) flgK 1112176..1114002 (-) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  H8R33_RS05930 (H8R33_000988) - 1114012..1114446 (-) 435 WP_002779263.1 flagellar protein FlgN -
  H8R33_RS05935 (H8R33_000989) flgM 1114489..1114686 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  H8R33_RS05940 (H8R33_000990) - 1114749..1115090 (-) 342 WP_002851191.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=609400 H8R33_RS05910 WP_002851165.1 1109453..1110634(+) (ctsF) [Campylobacter jejuni strain MS2005]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=609400 H8R33_RS05910 WP_002851165.1 1109453..1110634(+) (ctsF) [Campylobacter jejuni strain MS2005]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99