Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H8R33_RS05885 Genome accession   NZ_CP084080
Coordinates   1105014..1105325 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain MS2005     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1100014..1110325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS05875 (H8R33_000978) - 1100696..1101337 (+) 642 WP_002869785.1 HAD family hydrolase -
  H8R33_RS05880 (H8R33_000979) nifJ 1101430..1104990 (+) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H8R33_RS05885 ctsR 1105014..1105325 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H8R33_RS05890 (H8R33_000980) ctsD 1105303..1106715 (+) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H8R33_RS05895 (H8R33_000981) ctsP 1106708..1107316 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H8R33_RS05900 (H8R33_000982) ctsX 1107320..1107907 (+) 588 WP_002851370.1 membrane protein Machinery gene
  H8R33_RS05905 (H8R33_000983) ctsE 1107897..1109456 (+) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=609395 H8R33_RS05885 WP_002855438.1 1105014..1105325(+) (ctsR) [Campylobacter jejuni strain MS2005]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=609395 H8R33_RS05885 WP_002855438.1 1105014..1105325(+) (ctsR) [Campylobacter jejuni strain MS2005]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1