Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   H8R33_RS05900 Genome accession   NZ_CP084080
Coordinates   1107320..1107907 (+) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain MS2005     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1102320..1112907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS05885 ctsR 1105014..1105325 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H8R33_RS05890 (H8R33_000980) ctsD 1105303..1106715 (+) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H8R33_RS05895 (H8R33_000981) ctsP 1106708..1107316 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H8R33_RS05900 (H8R33_000982) ctsX 1107320..1107907 (+) 588 WP_002851370.1 membrane protein Machinery gene
  H8R33_RS05905 (H8R33_000983) ctsE 1107897..1109456 (+) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  H8R33_RS05910 (H8R33_000984) ctsF 1109453..1110634 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  H8R33_RS05915 (H8R33_000985) - 1110627..1111391 (-) 765 WP_002855821.1 TSUP family transporter -
  H8R33_RS05920 (H8R33_000986) - 1111395..1112159 (-) 765 WP_052786571.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=609398 H8R33_RS05900 WP_002851370.1 1107320..1107907(+) (ctsX) [Campylobacter jejuni strain MS2005]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=609398 H8R33_RS05900 WP_002851370.1 1107320..1107907(+) (ctsX) [Campylobacter jejuni strain MS2005]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1