Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   EL269_RS09830 Genome accession   NZ_AP018935
Coordinates   1876061..1876570 (-) Length   169 a.a.
NCBI ID   WP_057486692.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU-GS5823     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1871061..1881570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL269_RS09805 (SAGS_1870) tsaD 1871574..1872584 (-) 1011 WP_000655087.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  EL269_RS09810 (SAGS_1871) rimI 1872660..1873067 (-) 408 WP_000445945.1 ribosomal protein S18-alanine N-acetyltransferase -
  EL269_RS09815 (SAGS_1872) tsaB 1873069..1873761 (-) 693 WP_000978604.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  EL269_RS09820 (SAGS_1873) - 1873940..1874170 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  EL269_RS09825 (SAGS_1874) rnjA 1874224..1875903 (+) 1680 WP_000065498.1 ribonuclease J1 -
  EL269_RS09830 (SAGS_1875) lytF 1876061..1876570 (-) 510 WP_057486692.1 CHAP domain-containing protein Regulator
  EL269_RS09835 (SAGS_1876) - 1876790..1877962 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  EL269_RS09840 (SAGS_1877) glnA 1878050..1879396 (-) 1347 WP_000156227.1 type I glutamate--ammonia ligase -
  EL269_RS09845 (SAGS_1878) - 1879430..1879801 (-) 372 WP_000664338.1 MerR family transcriptional regulator -
  EL269_RS09850 (SAGS_1879) - 1879881..1880420 (-) 540 WP_000854121.1 FUSC family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18434.31 Da        Isoelectric Point: 4.2202

>NTDB_id=60920 EL269_RS09830 WP_057486692.1 1876061..1876570(-) (lytF) [Streptococcus agalactiae strain HU-GS5823]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASADYTVGTQPRVGSIVCWTDGSYGHVDYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=60920 EL269_RS09830 WP_057486692.1 1876061..1876570(-) (lytF) [Streptococcus agalactiae strain HU-GS5823]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGATTATACAGTAGGGACACAACCGCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGATTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTAACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

56.818

78.107

0.444
  lytF Streptococcus gordonii str. Challis substr. CH1

56.818

78.107

0.444
  SMU.836 Streptococcus mutans UA159

53.543

75.148

0.402

Multiple sequence alignment