Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   M6G08_RS10365 Genome accession   NZ_CP101137
Coordinates   2286593..2288002 (-) Length   469 a.a.
NCBI ID   WP_272586878.1    Uniprot ID   -
Organism   Streptomyces sp. M92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2281593..2293002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G08_RS10345 (M6G08_10350) vraR 2283022..2283687 (+) 666 WP_272586875.1 response regulator transcription factor Regulator
  M6G08_RS10350 (M6G08_10355) - 2283694..2284335 (-) 642 WP_272586876.1 phosphatase PAP2 family protein -
  M6G08_RS10355 (M6G08_10360) - 2284510..2285355 (+) 846 WP_272586877.1 hypothetical protein -
  M6G08_RS10360 (M6G08_10365) disA 2285387..2286511 (-) 1125 WP_217248019.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  M6G08_RS10365 (M6G08_10370) radA/sms 2286593..2288002 (-) 1410 WP_272586878.1 DNA repair protein RadA Machinery gene
  M6G08_RS10370 (M6G08_10375) - 2289030..2290880 (+) 1851 WP_272586879.1 hypothetical protein -
  M6G08_RS10375 (M6G08_10380) - 2290909..2291670 (-) 762 WP_272591304.1 hypothetical protein -
  M6G08_RS10380 (M6G08_10385) - 2291838..2292770 (+) 933 WP_272586880.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49849.98 Da        Isoelectric Point: 7.7381

>NTDB_id=609002 M6G08_RS10365 WP_272586878.1 2286593..2288002(-) (radA/sms) [Streptomyces sp. M92]
MAARAKTSKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGRVPDGMKVLEVADMGDALRVLPRSRRREAPREEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=609002 M6G08_RS10365 WP_272586878.1 2286593..2288002(-) (radA/sms) [Streptomyces sp. M92]
ATGGCTGCCCGTGCGAAGACCAGCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGTCCCGAATGCCAGGCATGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTACGGACGACCACGCCGGGGC
GGGTGACCACGTCCGCGCTGCCGATCGGGCAGGTCGACGGGCGGCAGGCCACCGCCCGGCCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGTGCCGTGGTGCTGGTCGCGGGTGAGCCCGGCGTCGGGAAGTCCACGCT
GCTGCTGGACGTCGCGGCCAAGTCGGCCAGTGACGAGCACCGGACGCTGTACGTCACGGGTGAGGAATCGGCGAGCCAGG
TGCGGCTGCGGGCCGACCGGATCAAGGCGATCGACGATCACCTGTATCTCGCGGCCGAGACCGATCTCGCGGCGGTGCTG
GGGCATCTGGACGCCGTGAAGCCGTCGCTGCTGATCCTCGACTCCGTGCAGACGGTCGCCTCTCCCGAGATCGACGGGGC
GCCGGGGGGCATGGCGCAGGTGCGGGAGGTCGCGGGGGCGCTGATCCGGGCGTCCAAGGAACGCGGGATGTCCACGCTGC
TGGTGGGGCACGTCACCAAGGACGGGGCCATCGCCGGTCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGCACTTC
GAGGGCGACCGGCACGCGCGGCTGAGGCTGGTGCGAGGGGTCAAGAACCGGTACGGCACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACGGGGCTGGCCGACCCCAGCGGGCTGTTCCTGACGCGGCGTGCCGAGCCGGTCCCCG
GCACGTGTCTGACCGTCACCCTGGAGGGGCGCCGGCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCGTCCCCGCGGCGTACGACGTCCGGGCTGGAGACCTCCCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGGGGGCG
GATCAGTGCCCTGGGGAAGCGGGACATCTACTCGGCGACGGTCGGGGGTGTGAAGCTGTCCGAGCCCGCCGCCGATCTCG
CGGTGGCGCTGGCGCTGGCGAGCGCCGCGAGTGACACCCCGCTGCCCAAGAACCTCGTGGCGATCGGCGAGGTCGGTCTC
GCCGGTGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGGCTCTCCGAGGCGCACCGCCTGGGGTTCACGCACGCCCTGGT
ACCGGCCGATCCGGGGCGGGTCCCCGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGTGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGGCGAGAGGCCCCACGGGAAGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.046

96.588

0.416
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus mitis NCTC 12261

44.131

90.832

0.401
  radA Streptococcus mitis SK321

44.131

90.832

0.401