Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   LCR03_RS09030 Genome accession   NZ_CP084008
Coordinates   1936260..1936976 (+) Length   238 a.a.
NCBI ID   WP_001829999.1    Uniprot ID   C0LF82
Organism   Staphylococcus epidermidis strain NBRC 113846     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1931260..1941976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCR03_RS09005 (LCR03_09005) - 1932658..1933443 (+) 786 WP_002469371.1 carbon-nitrogen family hydrolase -
  LCR03_RS09010 (LCR03_09010) hld 1933824..1933901 (-) 78 WP_002494082.1 delta-hemolysin -
  LCR03_RS09015 (LCR03_09015) - 1934219..1934803 (+) 585 WP_001830005.1 accessory gene regulator AgrB -
  LCR03_RS09020 (LCR03_09020) agrD 1934787..1934927 (+) 141 WP_001830021.1 cyclic lactone autoinducer peptide AgrD -
  LCR03_RS09025 (LCR03_09025) agrC 1934954..1936243 (+) 1290 WP_010959211.1 quorum-sensing sensor histidine kinase AgrC -
  LCR03_RS09030 (LCR03_09030) agrA 1936260..1936976 (+) 717 WP_001829999.1 quorum-sensing response regulator AgrA Regulator
  LCR03_RS09035 (LCR03_09035) - 1937044..1938003 (-) 960 WP_001830023.1 carbohydrate kinase -
  LCR03_RS09040 (LCR03_09040) - 1938010..1939482 (-) 1473 WP_001830011.1 sucrose-6-phosphate hydrolase -
  LCR03_RS09045 (LCR03_09045) - 1939742..1940695 (-) 954 WP_001830022.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27936.97 Da        Isoelectric Point: 5.6250

>NTDB_id=608947 LCR03_RS09030 WP_001829999.1 1936260..1936976(+) (agrA) [Staphylococcus epidermidis strain NBRC 113846]
MKIFVCEDDQRQREHMVSIIKNYIMIEEKPMELALATNDPYEVLEQSKELNDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRIIDCLETAHTRLKLLSKESNVDTIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVINRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=608947 LCR03_RS09030 WP_001829999.1 1936260..1936976(+) (agrA) [Staphylococcus epidermidis strain NBRC 113846]
ATGAAAATTTTTGTTTGTGAAGATGACCAAAGACAAAGAGAACATATGGTATCAATTATTAAAAACTACATAATGATTGA
AGAAAAGCCAATGGAGTTAGCCTTAGCAACAAATGATCCTTATGAGGTCTTAGAGCAATCAAAAGAACTTAATGACATTG
GTTGTTACTTCCTTGATATTCAATTAGAAGCTGATATGAACGGTATTAAATTAGCCAGTGAAATTCGTAAACATGATCCT
GTTGGTAATATTATATTTGTAACCAGTCACAGTGAACTGACTTATTTGACGTTTGTTTATAAAGTGGCTGCTATGGATTT
TATTTTTAAGGATGATCCATCTGAATTAAAAATGAGAATCATAGATTGTCTTGAAACAGCACATACACGACTCAAATTAT
TATCAAAAGAAAGTAATGTAGATACGATTGAGTTAAAGCGGGGAAGTAATTCAGTATACGTTCAATATGATGACATTATG
TTTTTTGAATCATCTACGAAATCTCATAGACTCATCGCACATCTTGATAATCGACAAATTGAATTTTATGGAAATTTAAA
GGAATTAGCACAGCTTGATGAACGTTTCTTTAGATGTCATAACAGTTTTGTGATAAACAGGCATAATATTGAATCTATTG
ATTCAAAAGAACGTATTGTTTACTTTAAGAATGGCGAAAATTGTTTCGCTTCAGTACGTAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0LF82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878
  comE/comE2 Streptococcus gordonii strain NCTC7865

35.178

100

0.374
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

35.178

100

0.374