Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NMK49_RS07760 Genome accession   NZ_CP101124
Coordinates   1618439..1619041 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus subsp. aureus RN4220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613439..1624041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK49_RS07740 yajC 1614935..1615195 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  NMK49_RS07745 tgt 1615214..1616353 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  NMK49_RS07750 queA 1616376..1617401 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  NMK49_RS07755 ruvB 1617403..1618407 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NMK49_RS07760 ruvA 1618439..1619041 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  NMK49_RS07765 - 1619055..1619510 (-) 456 WP_000368902.1 ACT domain-containing protein -
  NMK49_RS07770 obgE 1619523..1620815 (-) 1293 WP_000496100.1 GTPase ObgE -
  NMK49_RS07775 rpmA 1621170..1621454 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  NMK49_RS07780 - 1621466..1621786 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  NMK49_RS07785 rplU 1621792..1622100 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  NMK49_RS07790 mreD 1622267..1622797 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  NMK49_RS07795 mreC 1622797..1623639 (-) 843 WP_072533314.1 rod shape-determining protein MreC -
  NMK49_RS07800 - 1623839..1623958 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=608945 NMK49_RS07760 WP_000271547.1 1618439..1619041(-) (ruvA) [Staphylococcus aureus subsp. aureus RN4220]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=608945 NMK49_RS07760 WP_000271547.1 1618439..1619041(-) (ruvA) [Staphylococcus aureus subsp. aureus RN4220]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425