Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   LCR03_RS08675 Genome accession   NZ_CP084008
Coordinates   1866536..1867165 (-) Length   209 a.a.
NCBI ID   WP_001830439.1    Uniprot ID   A0A2G7HYX3
Organism   Staphylococcus epidermidis strain NBRC 113846     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861536..1872165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCR03_RS08645 (LCR03_08645) - 1861929..1862459 (-) 531 WP_001830371.1 acyl-CoA thioesterase -
  LCR03_RS08650 (LCR03_08650) - 1862539..1863780 (-) 1242 WP_002457094.1 aminopeptidase -
  LCR03_RS08655 (LCR03_08655) - 1863782..1863997 (-) 216 WP_001830421.1 DUF1128 domain-containing protein -
  LCR03_RS08660 (LCR03_08660) - 1864138..1864602 (+) 465 WP_001830437.1 low molecular weight protein-tyrosine-phosphatase -
  LCR03_RS08665 (LCR03_08665) - 1864610..1864894 (+) 285 WP_001830401.1 YtxH domain-containing protein -
  LCR03_RS08670 (LCR03_08670) - 1865301..1866479 (+) 1179 WP_001830411.1 YihY/virulence factor BrkB family protein -
  LCR03_RS08675 (LCR03_08675) vraR 1866536..1867165 (-) 630 WP_001830439.1 two-component system response regulator VraR Regulator
  LCR03_RS08680 (LCR03_08680) vraS 1867155..1868201 (-) 1047 WP_001830374.1 sensor histidine kinase Regulator
  LCR03_RS08685 (LCR03_08685) liaF 1868198..1868899 (-) 702 WP_002457093.1 cell wall-active antibiotics response protein LiaF -
  LCR03_RS08690 (LCR03_08690) - 1868914..1869300 (-) 387 WP_001830382.1 hypothetical protein -
  LCR03_RS08695 (LCR03_08695) map 1869458..1870213 (-) 756 WP_001830397.1 type I methionyl aminopeptidase -
  LCR03_RS08700 (LCR03_08700) - 1870387..1871373 (+) 987 WP_020368335.1 aromatic acid exporter family protein -
  LCR03_RS08705 (LCR03_08705) isaB 1871524..1872060 (-) 537 WP_001830372.1 immunodominant staphylococcal antigen IsaB family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23584.19 Da        Isoelectric Point: 4.7166

>NTDB_id=608945 LCR03_RS08675 WP_001830439.1 1866536..1867165(-) (vraR) [Staphylococcus epidermidis strain NBRC 113846]
MAIKVLFVDDHEMVRIGISSYLSTQEDIEVVGEGASGKDAITKAHELKPDLILMDLLMDDMDGVEATTEIKKDLPQIKVV
MLTSFIEDKEVYRALDSGVDSYILKTTSASDIADAVRKTYEGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=608945 LCR03_RS08675 WP_001830439.1 1866536..1867165(-) (vraR) [Staphylococcus epidermidis strain NBRC 113846]
GTGGCGATTAAAGTTTTATTTGTTGATGATCATGAAATGGTAAGAATCGGTATTTCAAGCTATCTTTCAACTCAAGAAGA
TATAGAAGTAGTAGGTGAGGGTGCTTCTGGTAAAGATGCTATCACTAAAGCGCATGAGCTAAAACCAGATTTAATATTAA
TGGATTTACTTATGGACGATATGGATGGTGTAGAAGCAACTACTGAAATAAAAAAAGATTTACCTCAAATTAAAGTAGTC
ATGTTAACAAGCTTTATAGAGGATAAAGAAGTTTATCGTGCACTTGATTCTGGAGTAGATAGTTATATTTTAAAGACAAC
AAGTGCAAGTGATATAGCTGACGCTGTGCGTAAAACGTATGAAGGTGAATCAGTATTTGAACCAGAAGTGTTAGTAAAAA
TGCGCAATCGTATGAAAAAACGTGCCGAGCTTTATGAAATGTTGACAGAAAGAGAAATGGAGATCCTATTACTTATAGCT
AAAGGATACTCTAACCAAGAGATTGCAAGCGCCTCTCATATCACCATCAAAACAGTAAAAACTCATGTAAGTAACATACT
AAGTAAATTAGAAGTACAAGATCGAACACAAGCAGTAATATATGCGTTCCAGCATAATTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7HYX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.737

100

0.947
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368