Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   LCH18_RS12100 Genome accession   NZ_CP083947
Coordinates   2476812..2481311 (-) Length   1499 a.a.
NCBI ID   WP_224466981.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2471812..2486311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS12070 (LCH18_12070) elsL 2472861..2473364 (-) 504 WP_178896076.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  LCH18_RS12075 (LCH18_12075) - 2473364..2473756 (-) 393 WP_062034333.1 YbaN family protein -
  LCH18_RS12080 (LCH18_12080) - 2473854..2474732 (+) 879 WP_224466977.1 DUF1853 family protein -
  LCH18_RS12085 (LCH18_12085) - 2474890..2475030 (+) 141 WP_224466979.1 entericidin A/B family lipoprotein -
  LCH18_RS12090 (LCH18_12090) dapE 2475151..2476284 (+) 1134 WP_026056444.1 succinyl-diaminopimelate desuccinylase -
  LCH18_RS12095 (LCH18_12095) - 2476346..2476807 (-) 462 WP_148826488.1 hypothetical protein -
  LCH18_RS12100 (LCH18_12100) chpA 2476812..2481311 (-) 4500 WP_224466981.1 Hpt domain-containing protein Regulator
  LCH18_RS12105 (LCH18_12105) - 2481477..2483549 (-) 2073 WP_224466982.1 methyl-accepting chemotaxis protein -
  LCH18_RS12110 (LCH18_12110) - 2483600..2484136 (-) 537 WP_004694490.1 chemotaxis protein CheW -
  LCH18_RS12115 (LCH18_12115) - 2484142..2484510 (-) 369 WP_004694491.1 response regulator -
  LCH18_RS12120 (LCH18_12120) pilG 2484538..2484921 (-) 384 WP_004694493.1 twitching motility response regulator PilG Regulator
  LCH18_RS12125 (LCH18_12125) - 2485202..2485840 (+) 639 WP_087010454.1 hypothetical protein -

Sequence


Protein


Download         Length: 1499 a.a.        Molecular weight: 167426.29 Da        Isoelectric Point: 4.4030

>NTDB_id=608762 LCH18_RS12100 WP_224466981.1 2476812..2481311(-) (chpA) [Acinetobacter johnsonii strain CSUSB1]
MKEILKHLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELDPLFEKWYAEPTHQETLLSIRRHFHTLKGSGRMVGAKSA
GETAWAVEDTLNRVISGAVPLTATVQKFAKTVFKLYQFKLYPTFKAVQEIDLDLRPLVLIGQQLQQNQSLEPALEELLQL
SNHLNSNDVVTGLELIDIEVAEPELQVADASEQDDQVHDVLKETLAIFIEEAEDHLATIDQFLNADETKVQDYNGLIRAL
HTLRGSSSMAQIEHVFNASSKVENLFKTLVQEEIVSTSKEISLLTQYAEFVRDYLHVLGRGTNEQLDVIYATFTTAWDNY
GFSIEDVDDELNPQGMVSKLIELNIDLLLDAEFEFDQRAKVEYPDYIQHLGEQAKQLLEFTNNRAAQGIHDFTSELYAGY
QALLKKPELLNVDYAYELFGQAHQEFIHLFDTLAAGQRVILTEEVHKVLNELMAFVQQDVESTSTTVIELVAEAIVSGNT
LQPSLDLAQISQQIASDHQYKQSNTANTDFDDDLLDIFLEEAEELLMGMDQDLNTWSKNGNDTAALNNLMRYLHTLKGGA
NMISAPFIGSIAHELESIYERVIRQQIATTPQLISIIRLVQDDVADRIQVIRTEKVDYPATATIKVLHNIQSLVEGTTLT
ASASEPLVEAFVKAIEEAQPPVQEPLSNVDSIIEVEITAVESATAIEASSVVENTDVTVIEQLDTPSLVQEEAVSAVEEA
ASLLSIVEETFLEEAEEILATTDGLLKQWTEQRSDRSVLLQLQRAAHSLKGGARMAENEPVGAIAYELETTFEQFAVHNF
SSNVYDPLLQTAFEWLKQAIFKRDFSNYDGLKNSLASIDYVDVIAQLPTRVTQIDLLNAVPSFEFVQGDGTEPPAMLGEW
KETTHLDGGNEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSE
NSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLAEKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQ
RIVRQTASTLNRPTELVVHNTEGELDRTILERLVTPFEHMLRNAIDHGIEDTEQRSAAKKSATGQIELNISRQGTDVIVS
FKDDGKGIDESTIKAKALNLGLIKADQVLDKQEILQFIFHPGFSTAKEVTQISGRGVGLDVVQSEIKALGGHVTVESEIG
FGTTFIIRVPTTVAVSDALMVKAGDQQYAIPLAQIDRIVRIAPTALDQYFHSKDDQFKIDGVSYKLRYLSEFLSNQPIPR
LSNIGHSLPVLLIKGNSGQTIALLVDQLIGSRAQIVVKPVGQQFASIGAIAGATILGDGHVCLILDGQNIARQILSTKRV
THAADHRDFGRHQDTRRLVMIVDDSVTVRKVTSRLLERQGFDIVTAKDGVDAMEQLESVKPDLMLLDIEMPRMDGFEVTN
LVRHHEIHQNLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLLAEKQG

Nucleotide


Download         Length: 4500 bp        

>NTDB_id=608762 LCH18_RS12100 WP_224466981.1 2476812..2481311(-) (chpA) [Acinetobacter johnsonii strain CSUSB1]
ATGAAAGAAATATTAAAACATTTAGTTGAAACGACAACGCTTCCGGAAGATAGTTATCTAGATCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGAGTTAGATCCATTATTTGAAAAGTGGTACGCTGAACCGACAC
ATCAAGAAACCTTGTTGAGCATACGTCGTCATTTCCATACCTTGAAAGGCTCTGGTCGTATGGTGGGGGCAAAGTCAGCA
GGTGAAACAGCGTGGGCAGTTGAAGACACCTTAAATCGTGTGATTTCAGGTGCTGTACCGCTTACGGCAACGGTTCAAAA
ATTTGCTAAGACGGTATTTAAACTGTATCAATTTAAACTGTATCCGACTTTTAAAGCGGTGCAGGAAATTGATCTTGATC
TTCGTCCATTGGTTTTAATTGGACAACAATTACAACAAAATCAAAGTTTAGAACCTGCTCTAGAAGAGTTGCTACAACTG
TCTAATCATCTAAATAGTAATGATGTCGTGACGGGATTAGAGTTGATTGATATCGAAGTTGCTGAACCTGAGCTACAAGT
TGCAGATGCTTCTGAACAGGATGATCAAGTGCATGATGTCCTTAAAGAAACTTTAGCGATCTTCATTGAAGAAGCGGAAG
ACCATTTAGCGACTATCGATCAGTTCTTAAATGCAGATGAAACCAAAGTACAAGATTACAATGGCTTAATCCGTGCTTTA
CATACATTGCGCGGTAGTTCGTCTATGGCGCAAATTGAGCATGTTTTTAATGCCAGCTCAAAAGTCGAAAATCTATTTAA
AACCTTGGTTCAAGAAGAGATCGTTTCTACTTCGAAGGAGATCTCTTTACTCACCCAATATGCTGAATTTGTGCGTGATT
ATTTACATGTGCTTGGGCGTGGTACGAACGAACAGCTTGATGTGATTTATGCTACGTTCACTACGGCTTGGGATAACTAT
GGTTTCAGTATAGAAGACGTAGACGATGAACTGAACCCACAAGGTATGGTCTCGAAGCTGATCGAGTTAAATATTGATCT
GTTGCTTGATGCCGAGTTTGAGTTTGATCAGCGTGCTAAGGTTGAATATCCAGACTATATTCAGCACTTAGGTGAACAAG
CAAAACAATTGCTAGAATTTACCAATAACCGTGCTGCTCAAGGAATTCATGACTTTACTTCTGAGCTATATGCTGGTTAT
CAAGCCTTACTGAAAAAGCCAGAATTACTCAATGTAGATTATGCATACGAGTTATTTGGTCAGGCACATCAAGAATTTAT
CCATTTATTTGACACTTTAGCTGCGGGTCAGCGCGTCATTCTGACTGAAGAAGTGCATAAAGTTTTGAATGAATTAATGG
CCTTCGTACAGCAAGATGTTGAATCGACTTCGACGACGGTAATTGAACTTGTTGCTGAGGCTATTGTTTCTGGAAATACT
TTACAACCAAGTCTTGATCTTGCACAGATTTCGCAGCAAATTGCATCGGATCATCAGTACAAGCAATCGAATACAGCCAA
TACCGATTTTGATGATGATTTGCTTGATATCTTCTTGGAAGAAGCCGAAGAATTATTGATGGGGATGGATCAGGATCTCA
ATACTTGGTCTAAAAATGGCAATGATACCGCAGCGCTCAATAATTTAATGCGTTATTTGCACACCTTAAAAGGTGGTGCA
AATATGATTTCTGCACCTTTTATTGGTTCGATTGCACACGAATTAGAGTCTATTTATGAGCGTGTGATTCGTCAGCAAAT
AGCCACAACGCCACAGTTGATCAGCATCATTCGCTTAGTACAGGATGACGTCGCAGACCGAATTCAGGTCATTCGTACGG
AGAAGGTTGATTACCCAGCAACAGCGACCATTAAGGTATTGCATAACATTCAGAGCTTGGTTGAGGGTACGACTCTTACC
GCTTCAGCATCTGAGCCTTTGGTTGAGGCGTTTGTTAAAGCAATTGAAGAGGCTCAGCCTCCAGTTCAAGAACCTTTATC
TAATGTAGATAGCATAATTGAAGTTGAAATAACTGCTGTTGAGTCAGCAACTGCAATTGAAGCGTCGAGTGTAGTTGAAA
ACACTGATGTTACTGTCATTGAACAGCTGGATACTCCGTCACTTGTCCAAGAAGAAGCAGTCAGCGCTGTTGAAGAAGCA
GCTAGTCTTTTATCAATTGTTGAAGAAACTTTCTTGGAAGAAGCTGAAGAAATTTTAGCGACTACGGATGGCTTACTGAA
ACAGTGGACTGAACAGCGTAGTGACCGTAGTGTGTTACTGCAATTGCAACGTGCCGCGCACAGTTTAAAAGGCGGCGCAC
GTATGGCGGAGAATGAACCCGTTGGTGCGATTGCTTATGAGCTAGAAACCACATTTGAGCAATTTGCTGTACATAATTTC
AGTTCAAACGTGTATGACCCATTATTGCAAACCGCATTTGAATGGTTAAAACAAGCCATCTTCAAACGTGATTTTAGTAA
TTATGATGGTCTGAAAAATAGCTTAGCATCTATTGATTATGTGGATGTGATTGCGCAATTACCTACGCGTGTAACTCAAA
TTGATTTACTCAATGCTGTACCAAGTTTTGAGTTTGTGCAGGGTGATGGTACTGAGCCACCAGCAATGCTGGGTGAGTGG
AAAGAAACGACTCACTTGGATGGTGGTAATGAGATGATCCGTATCTCAGCTGATTTGGTTGAAAAAATGATCGACCTATC
AGGTGAAAATGCAATTAACCGTTCACGTATTGAGATGGATTTAGGTCAACTCGGCAATACTTTGAACGAGATGGAGCTTG
CAATTAAGCGTTTGGCGGATCAGTTACGTCGAATGGAGGGTGAGCTTGAGAGTCAAATTATTGCAAAGCACGGTTCTGAA
AACTCGCGCTACGCAGACTTTGATCCCTTGGAAATGGACCAATATTCATCGCTGAATCAATTGTCTAAATCCTTAGCCGA
ATCAGCTTCGGATTTGGTCGACTTCAAGAGCACTTTGGCTGAGAAAATTCGTGATGCGGAAGGCTTGTTATTACAACAAT
CCCGTATTCAAGCGGAGATTCAAGAAAGCTTAATGCGGACACGTTTGGTGCCGTTCTCACGTATGTTGCCGCGTTTGCAG
CGTATTGTGCGTCAGACCGCCTCAACCTTAAACCGCCCAACGGAACTGGTCGTTCATAACACCGAAGGTGAGTTGGATCG
TACAATTCTTGAACGTTTGGTTACGCCGTTTGAGCATATGCTACGTAACGCAATCGACCACGGTATTGAAGATACGGAAC
AACGTAGTGCTGCGAAAAAATCAGCCACAGGCCAAATTGAGCTGAACATTAGCCGTCAAGGTACAGATGTTATCGTTAGC
TTTAAAGATGATGGTAAGGGTATTGATGAAAGCACGATTAAAGCGAAAGCGCTAAACTTAGGTTTAATTAAAGCCGATCA
AGTGCTAGATAAACAAGAAATCTTACAGTTTATTTTCCATCCGGGTTTTAGTACGGCCAAAGAAGTGACGCAAATTTCTG
GACGTGGTGTTGGTCTTGATGTGGTACAAAGTGAAATTAAAGCACTGGGTGGACATGTCACGGTTGAATCGGAAATTGGA
TTCGGTACGACCTTCATTATTCGCGTACCGACTACGGTAGCGGTGAGTGATGCATTGATGGTGAAAGCCGGTGATCAACA
ATATGCGATTCCATTGGCGCAGATTGATCGTATTGTGCGTATTGCTCCAACAGCATTGGATCAGTATTTCCACAGCAAAG
ATGACCAATTCAAAATTGATGGTGTGAGTTATAAACTGCGCTATTTATCTGAGTTTTTATCCAATCAGCCGATTCCACGT
TTGAGTAATATTGGACATTCATTGCCAGTGTTGTTAATTAAAGGCAATAGTGGACAAACCATAGCATTATTAGTCGATCA
GTTGATTGGTTCACGTGCGCAAATTGTAGTGAAGCCAGTTGGACAACAATTTGCTAGCATTGGTGCAATTGCAGGTGCAA
CGATTTTGGGTGATGGCCATGTGTGTTTGATTTTAGATGGTCAGAATATTGCACGTCAGATTTTAAGCACCAAGCGTGTT
ACGCATGCAGCCGATCACCGTGACTTTGGTCGTCATCAGGATACGCGTCGTTTAGTGATGATTGTGGATGACTCGGTTAC
GGTTCGCAAGGTCACATCGCGCTTATTAGAGCGCCAAGGCTTTGATATTGTGACAGCAAAAGACGGTGTTGATGCGATGG
AGCAGCTTGAGAGTGTTAAACCGGACTTGATGTTGTTAGATATTGAAATGCCACGTATGGATGGTTTCGAAGTAACGAAC
TTGGTTCGTCACCACGAAATTCACCAGAACTTGCCGATTATTATGATTACATCGCGTACGGGTGAAAAACACCGTGAACG
TGCTTTCAGCTTGGGCGTGACACACTACATGGGCAAACCATTCCAAGAGGCAGAATTACTTGCCAACATTCAGCAGTTAT
TGGCTGAAAAGCAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.735

100

0.617