Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   LCH16_RS17465 Genome accession   NZ_CP083943
Coordinates   3547297..3548460 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain CSUSB3     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3542297..3553460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS17435 (LCH16_17435) - 3542562..3542981 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  LCH16_RS17440 (LCH16_17440) comFC 3543055..3543744 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  LCH16_RS17445 (LCH16_17445) - 3543750..3544034 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  LCH16_RS17450 (LCH16_17450) comFA 3544092..3545477 (-) 1386 WP_015418335.1 DEAD/DEAH box helicase Machinery gene
  LCH16_RS17455 (LCH16_17455) - 3545585..3546433 (-) 849 WP_015418336.1 DegV family protein -
  LCH16_RS17460 (LCH16_17460) degU 3546531..3547220 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LCH16_RS17465 (LCH16_17465) degS 3547297..3548460 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LCH16_RS17470 (LCH16_17470) - 3548683..3549330 (+) 648 WP_003151384.1 YigZ family protein -
  LCH16_RS17475 (LCH16_17475) - 3549335..3550549 (+) 1215 WP_015418337.1 LCP family protein -
  LCH16_RS17480 (LCH16_17480) - 3550639..3551715 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  LCH16_RS17485 (LCH16_17485) tuaH 3551848..3553044 (-) 1197 WP_061860924.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=608706 LCH16_RS17465 WP_007407484.1 3547297..3548460(-) (degS) [Bacillus velezensis strain CSUSB3]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=608706 LCH16_RS17465 WP_007407484.1 3547297..3548460(-) (degS) [Bacillus velezensis strain CSUSB3]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951